Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_J02
(832 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 26 0.56
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 30 2.3
AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical ... 30 2.3
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 29 3.1
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 29 3.1
U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific ... 29 4.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.1
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 29 5.4
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 28 7.1
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 28 7.1
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 28 7.1
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 28 7.1
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -3
Query: 473 GGXPPPXXFFFXXPPPPPP 417
GG PPP F PPPPPP
Sbjct: 102 GGIPPPPPMFGAPPPPPPP 120
Score = 31.5 bits (68), Expect = 0.77
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 479 GGGGXPPPXXFFFXXPPPPPP 417
G GG PPP F PPPPP
Sbjct: 79 GPGGIPPPPPMFAGGIPPPPP 99
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 482 GGGGGXPPPXXFFFXXPPPPP 420
G GG PPP F PPPPP
Sbjct: 79 GPGGIPPPPPMFAGGIPPPPP 99
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 473 GGXPPPXXFFFXXPPPPP 420
GG PPP PPPPP
Sbjct: 92 GGIPPPPPMMGGIPPPPP 109
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 476 GGGXPPPXXFFFXXPPPPP 420
GG PPP F PPPPP
Sbjct: 102 GGIPPPPPMFGAPPPPPPP 120
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 418 GGGGGGXXKKKXXGGGXPPPPP 483
GGGGGG GGG PPPP
Sbjct: 93 GGGGGGCGGGGGCGGGCAPPPP 114
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 421 GGGGGXXKKKXXGGGXPPPPP 483
GGGGG GGG PPPP
Sbjct: 37 GGGGGCGGGGGCGGGCAPPPP 57
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 25.8 bits (54), Expect(2) = 0.56
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -3
Query: 464 PPPXXFFFXXPPPPPP 417
PPP PPPPPP
Sbjct: 541 PPPVGMANGGPPPPPP 556
Score = 24.6 bits (51), Expect(2) = 0.56
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 434 PPPPPPXXXFFF 399
PPPPPP F F
Sbjct: 578 PPPPPPPPSFMF 589
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 476 GGGXPPPXXFFFXXPPPPP 420
G G PPP ++ PPPPP
Sbjct: 92 GLGPPPPPPHYYTQPPPPP 110
>AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical
protein Y52B11A.5 protein.
Length = 219
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -3
Query: 482 GGGGGXPPPXXFFFXXPPPPPP 417
GGG G PPP PPPPPP
Sbjct: 23 GGGKGRPPPA----RPPPPPPP 40
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 418 GGGGGGXXKKKXXGGGXPPPPP 483
GGGGGG GG PPPP
Sbjct: 23 GGGGGGYSGGGGGGGDAAPPPP 44
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +1
Query: 421 GGGGGXXKKKXXGGGX--PPPPP 483
GGGGG GGG PPPPP
Sbjct: 23 GGGGGGYSGGGGGGGDAAPPPPP 45
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 421 GGGGGXXKKKXXGGGXPPPPP 483
GGGGG G G PPPPP
Sbjct: 50 GGGGGCGYGGGYGCGIPPPPP 70
>U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific
family, class qprotein 4 protein.
Length = 373
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = +1
Query: 418 GGG--GGGXXKKKXXGGGXPPP 477
GGG GGG K GGG PPP
Sbjct: 24 GGGPAGGGGGNKSAGGGGAPPP 45
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 464 PPPXXFFFXXPPPPPPXXXF 405
PPP F PPPPPP F
Sbjct: 774 PPPPGGFKGGPPPPPPPGMF 793
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 479 GGGGXPPPXXFFFXXPPPPPPXXXF 405
GG PPP PPPPPP F
Sbjct: 756 GGPPPPPPPPGGCPPPPPPPPPGGF 780
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 464 PPPXXFFFXXPPPPPPXXXF 405
PPP F PPPPPP F
Sbjct: 774 PPPPGGFKGGPPPPPPPGMF 793
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 479 GGGGXPPPXXFFFXXPPPPPPXXXF 405
GG PPP PPPPPP F
Sbjct: 756 GGPPPPPPPPGGCPPPPPPPPPGGF 780
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 464 PPPXXFFFXXPPPPPPXXXF 405
PPP F PPPPPP F
Sbjct: 357 PPPPGGFKGGPPPPPPPGMF 376
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 479 GGGGXPPPXXFFFXXPPPPPPXXXF 405
GG PPP PPPPPP F
Sbjct: 339 GGPPPPPPPPGGCPPPPPPPPPGGF 363
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Frame = +1
Query: 418 GGGGGGXXKKKXXGGG---XPPPPP 483
GGGGGG + GG PPPPP
Sbjct: 18 GGGGGGGGEAGYSGGAGVEAPPPPP 42
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 418 GGGGGGXXKKKXXGGGXPPPP 480
GGGGGG GG P PP
Sbjct: 497 GGGGGGFGSGSPFGGAAPSPP 517
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 482 GGGGGXPPPXXFFFXXPPPPPP 417
GGGGG P + PPPPPP
Sbjct: 84 GGGGGYGRPQG--YVPPPPPPP 103
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 473 GGXPPPXXFFFXXPPPPP 420
GG PPP PPPPP
Sbjct: 787 GGIPPPPPLGIIPPPPPP 804
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 421 GGGGGXXKKKXXGGGXPPPPP 483
GGGGG G PPPPP
Sbjct: 196 GGGGGSGGSGGGSGRFPPPPP 216
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 473 GGXPPPXXFFFXXPPPPP 420
GG PPP PPPPP
Sbjct: 787 GGIPPPPPLGIIPPPPPP 804
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,698,108
Number of Sequences: 27780
Number of extensions: 121444
Number of successful extensions: 1544
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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