Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_J01
(899 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 30 0.52
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 0.68
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 29 1.2
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 28 1.6
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 28 1.6
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 28 1.6
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 2.1
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 28 2.1
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 28 2.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 2.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 2.1
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.7
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 27 2.7
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 2.7
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc... 27 3.6
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 27 4.8
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc... 26 6.3
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 26 6.3
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 26 6.3
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 26 8.4
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 29.9 bits (64), Expect = 0.52
Identities = 15/51 (29%), Positives = 31/51 (60%)
Frame = +1
Query: 217 KSNRYRQKMEDLESSLNQYKEQIKIVQQSLEATHDLKEKESLLTLQSDLNQ 369
K + QK+EDL S+ + E++ I+ Q L L+E+ ++L++++ N+
Sbjct: 568 KQTKLTQKLEDLIESVQKSGEKLMIMHQKL---FHLQEEHTILSIKASYNK 615
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 29.5 bits (63), Expect = 0.68
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 718 FTHPTHAEMLPCPFYLDGDCKFSDEQCRYSH 810
F+H E C ++L G+CKF +C SH
Sbjct: 63 FSHSLETERPICKYFLKGNCKFG-PKCALSH 92
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/62 (22%), Positives = 36/62 (58%)
Frame = +1
Query: 220 SNRYRQKMEDLESSLNQYKEQIKIVQQSLEATHDLKEKESLLTLQSDLNQLIELTRESLA 399
S+ + +D++ S Q ++++ + +L+ TH+ +KE + +++D++ L++ SL
Sbjct: 716 SSELIELQKDMKESYRQLVQELRSLY-NLQHTHEESQKELMYGVRNDIDALVKTCTTSLN 774
Query: 400 TA 405
A
Sbjct: 775 DA 776
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 688 QFNDLKVQILFTHPTHAEMLPCPFYLDGDCKFSDEQCRYSH 810
+FN + P + +PC F+ G C S + C +SH
Sbjct: 20 EFNSEATSLTRPSPKSLQHVPCKFFRQGTCT-SGKNCIFSH 59
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/37 (37%), Positives = 27/37 (72%), Gaps = 3/37 (8%)
Frame = +1
Query: 481 AEMNDSNAYNDDSKNKN---DSEENNGNSDIEDDLSS 582
+E +DS++ + DS++++ DS+ ++ +SD EDD SS
Sbjct: 249 SEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSS 285
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +1
Query: 238 KMEDLESSLNQYKEQIKIVQQSLE-ATHDL-KEKESLLTLQSDLNQLIELTR 387
K+++L S++N+Y+EQ+ +VQ E A L K + S L L ++ EL R
Sbjct: 1622 KIKELTSTVNKYREQLAMVQSLNEHAESSLSKAERSKNYLTGRLQEVEELAR 1673
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 220 SNRYRQKMEDLESSLNQYKEQIKIVQQSLEATHDLKEKESLLTLQSDLNQLIELTRESLA 399
S+R +K + LE N YK+Q+ +V + L T + EKE L +D ++ RE
Sbjct: 1029 SHRNAEK-QHLEKE-NDYKQQLLLVTEDLRKTREDYEKE--LLRHADARSTLQKLREDYT 1084
Query: 400 TA 405
A
Sbjct: 1085 KA 1086
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 484 EMNDSNAYNDDSKNKNDSEENNGNSDIEDDLSSL 585
E D+ ND + +S ENNG ++ +DD SSL
Sbjct: 137 EKTDNEDDNDVEISTQESLENNGLAEKKDDTSSL 170
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 508 NDDSKNKNDSEENNGNSDIEDDLSSLLGM 594
ND +KN+ND N S+ +DD +S+ M
Sbjct: 428 NDTTKNQNDQILPNETSESDDDANSISSM 456
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 481 AEMNDSNAYNDDSKNKNDSEENNGNSDIEDDLSSL 585
AE ++ N ++D + N++ NN N+D +D L+ L
Sbjct: 525 AEDDNDNDNDNDRDSNNNNNNNNTNTDDDDKLAYL 559
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 481 AEMNDSNAYNDDSKNKNDSEENNGNSDIEDDLSSL 585
AE ++ N ++D + N++ NN N+D +D L+ L
Sbjct: 525 AEDDNDNDNDNDRDSNNNNNNNNTNTDDDDKLAYL 559
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/66 (25%), Positives = 37/66 (56%)
Frame = +1
Query: 220 SNRYRQKMEDLESSLNQYKEQIKIVQQSLEATHDLKEKESLLTLQSDLNQLIELTRESLA 399
+NR+++ E +S++ Q KEQ ++ TH+ +KE + +L+ ++ I L ++ L
Sbjct: 269 NNRFKEFEEREKSAIKQNKEQSSEGSKTANQTHE--QKELINSLEKKVSD-IALEKQLLE 325
Query: 400 TATSKH 417
A ++
Sbjct: 326 EAVERY 331
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +1
Query: 574 LSSLLGMRCAVYHTHKWGGQPSLHNAMVSSILX--RADDDQFNDL--KVQILFTHPTHAE 741
L+ G+ + +H +GG H ++S+L + +++ + + H TH E
Sbjct: 465 LTESRGLDLSAHHLAVFGGAGGQHACAIASLLNIEKIIIHKYSSVLSAYGLALAHVTHEE 524
Query: 742 MLPCPFYLDGD 774
+PC LD D
Sbjct: 525 QMPCLSVLDED 535
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 490 NDSNAYNDDSKNKNDSEENNGNSDIEDDLSSLLGM 594
N++N N +S N N++ N N + SSL G+
Sbjct: 562 NNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGL 596
>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 615
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 224 LDFHYLCGYNIYNRVNLIYVFSF*CINKI 138
LDF Y+CG + + +IY F I+K+
Sbjct: 33 LDFDYMCGRTVPSVAAIIYTFGSQSISKL 61
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 26.6 bits (56), Expect = 4.8
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 484 EMNDSNAYNDDSKNKNDSEENNGNSDIEDD 573
E ND ++ +DD N D + S++ D+
Sbjct: 351 EANDESSEDDDEDNNTDEANEDAQSNVSDE 380
>SPBC3B9.06c |apg3||autophagy associated protein Apg3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 275
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 511 DDSKNKNDSEENNGNSDIEDDLSSL 585
DD++NK+D ++++ S I D S +
Sbjct: 95 DDTRNKDDDQDDDAISSIHSDTSDI 119
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 481 AEMNDSNAYNDDSKNKNDSEENNGNSD 561
+E N+S+ D +++ SEE+NGN +
Sbjct: 170 SERNESSLSLDSGESEKKSEEDNGNGE 196
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/57 (26%), Positives = 33/57 (57%)
Frame = +1
Query: 235 QKMEDLESSLNQYKEQIKIVQQSLEATHDLKEKESLLTLQSDLNQLIELTRESLATA 405
+KM+DL SS+ +++ +Q E T + S++ + S++ L + +++LAT+
Sbjct: 72 EKMDDLNSSIVSLLQELSTLQSVAENT-----QSSIVQMTSEIKNL-DFAKQNLATS 122
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 8.4
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Frame = +1
Query: 232 RQKMEDLESSLNQYKEQIKIVQQSLEATHDLKEKESLLT--------LQSDLNQLIE 378
RQK E L + + E+ +V A+ D E SLL L++ LNQL+E
Sbjct: 11 RQKKESLNPTTIEIPEKFPLVNVQFRASDDSNELASLLVPGNSSVRQLEALLNQLLE 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,894
Number of Sequences: 5004
Number of extensions: 61129
Number of successful extensions: 269
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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