Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_J01
(899 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-19|AAA82274.1| 432|Caenorhabditis elegans Hypothetical p... 63 3e-10
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr... 32 0.49
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 32 0.64
AC024826-3|AAP13746.1| 343|Caenorhabditis elegans Hypothetical ... 32 0.64
AC024826-2|AAF60798.1| 413|Caenorhabditis elegans Hypothetical ... 32 0.64
Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical pr... 31 1.5
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 29 3.4
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 29 4.5
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z74476-2|CAA98962.1| 200|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z98866-18|CAB11555.2| 387|Caenorhabditis elegans Hypothetical p... 29 6.0
Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical pr... 29 6.0
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 29 6.0
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr... 29 6.0
DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein. 29 6.0
AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transpor... 29 6.0
Z82268-4|CAB05199.1| 741|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z81104-1|CAB70255.1| 329|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z49911-6|CAA90132.1| 831|Caenorhabditis elegans Hypothetical pr... 28 7.9
>U41007-19|AAA82274.1| 432|Caenorhabditis elegans Hypothetical
protein C33H5.17 protein.
Length = 432
Score = 62.9 bits (146), Expect = 3e-10
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 3/127 (2%)
Frame = +1
Query: 487 MNDSNAYNDDSKNKNDSEENNGNSDIEDDLS--SLLGMRCAV-YHTHKWGGQPSLHNAMV 657
M + S + ++ +E + +S DD S SLLG RC V Y + + SLH A++
Sbjct: 44 MEEDEEKTQKSPDDDEIDEQDEDSAEIDDTSTDSLLGSRCMVPYDSDR---SLSLHTAII 100
Query: 658 SSILXRADDDQFNDLKVQILFTHPTHAEMLPCPFYLDGDCKFSDEQCRYSHGNVVQLSDL 837
I + +V++LF+HPT + M PC +L CKF +E CR+SHG V+L +
Sbjct: 101 MEIE--------SSKRVRVLFSHPTCSAMKPCTHFLSSSCKF-NENCRFSHGYSVELERI 151
Query: 838 KEAIXPN 858
++ P+
Sbjct: 152 QDYQVPD 158
>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
protein C06E1.10 protein.
Length = 1148
Score = 32.3 bits (70), Expect = 0.49
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Frame = +1
Query: 217 KSNRYRQKMEDLESSLNQYKEQIKIVQQSLEATHDLKEK--ESLLTLQSDLNQLIELTRE 390
K NR K +++ Q K ++ VQ S +A +E+ L Q D ++L +L
Sbjct: 43 KKNRNFAKEKEVAKLTKQAKRKLAAVQ-SRKALKQTQEELFAGLAEFQLDPSKLCQL--- 98
Query: 391 SLATATSKHLKSXXXXXXXXXXXXXYARFMAEMNDSNAY--NDDSKNKNDSEENNGNSDI 564
S +T SK + + A+ + Y +D+S ++ + EE G++DI
Sbjct: 99 SSSTKLSKEPEKAPVFPEKLKVFSGKTKTEAKRTQQDYYPTDDESSSEEEEEEEEGDNDI 158
Query: 565 ED 570
ED
Sbjct: 159 ED 160
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 31.9 bits (69), Expect = 0.64
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Frame = +1
Query: 244 EDLESSLNQYKEQIKIVQQSLEATHDLKEKESLLTL--QSD--LNQLIELTRESL-ATAT 408
E++++ N+ ++ I+ ++ A D K+ + L+ L Q+D + L +L ++ ATA
Sbjct: 234 EEMKNEKNRIQKLIQEDEEGYRAMLDEKKDQRLVYLLEQTDDYIKSLCDLLKQQQNATAG 293
Query: 409 SKHLKSXXXXXXXXXXXXXYARFMAEMNDSNAYNDDSKNKNDSEENNGNSDIEDDLSSLL 588
S KS +AE + + D ++N +D EN +IED ++
Sbjct: 294 SLATKSYIRKEYDG---------VAEEDKVKSILDKARNDDDEYENKTKMNIEDYYTTAH 344
Query: 589 GMRCAVYHTH--KWGGQPSL 642
G+R + H GG PSL
Sbjct: 345 GVREEIKEQHFMMGGGNPSL 364
>AC024826-3|AAP13746.1| 343|Caenorhabditis elegans Hypothetical
protein Y55F3AM.6b protein.
Length = 343
Score = 31.9 bits (69), Expect = 0.64
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 736 AEMLPCPFYL-DGDCKFSDEQCRYSHGN 816
A+++ CP++ GDC D C ++HGN
Sbjct: 139 AQLMMCPYHQKSGDCNRQDMDCPFAHGN 166
>AC024826-2|AAF60798.1| 413|Caenorhabditis elegans Hypothetical
protein Y55F3AM.6a protein.
Length = 413
Score = 31.9 bits (69), Expect = 0.64
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 736 AEMLPCPFYL-DGDCKFSDEQCRYSHGN 816
A+++ CP++ GDC D C ++HGN
Sbjct: 139 AQLMMCPYHQKSGDCNRQDMDCPFAHGN 166
>Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical protein
C04A11.3 protein.
Length = 1228
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +1
Query: 226 RYRQKMEDLESSLN-----QYKEQIKIVQQSLEATHDLKEKESLLTLQSDLNQLIELTRE 390
R +Q+M+ + L Q K+ +K ++ +E H LKEK+ L+ LQ + +++ E
Sbjct: 926 RLKQEMKIFKQELTMLSKVQRKDALKQRKEQIEIEHQLKEKDFLMQLQQNAEAMLQRMAE 985
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/65 (26%), Positives = 36/65 (55%)
Frame = +1
Query: 217 KSNRYRQKMEDLESSLNQYKEQIKIVQQSLEATHDLKEKESLLTLQSDLNQLIELTRESL 396
+S+ RQ E ++ +N++K ++++++ LKEKES T SD ++ + E++
Sbjct: 739 ESSTPRQLPERWKAIVNKFKHNLEVLKEKKRL---LKEKESTSTTGSDSSETTTVVAENI 795
Query: 397 ATATS 411
T+
Sbjct: 796 DEVTT 800
>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 475 FMAEMNDSNAYNDDSKNKNDSEENNGNSDIEDDLSS 582
F E + S+ NDD + +D EE++ + D +DD S
Sbjct: 1687 FDGESSSSDDDNDDDDDDDDEEEDDDDDDDDDDEDS 1722
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
F54E4.1 protein.
Length = 2948
Score = 29.1 bits (62), Expect = 4.5
Identities = 22/75 (29%), Positives = 30/75 (40%)
Frame = +1
Query: 349 LQSDLNQLIELTRESLATATSKHLKSXXXXXXXXXXXXXYARFMAEMNDSNAYNDDSKNK 528
L+S LN I L E L+TA+ L S + AE + DD
Sbjct: 2378 LRSRLNLRI-LGNEKLSTASKDSLPSEALHSKWVPPQKNIVQLFAEKPSVMMHEDDDDAY 2436
Query: 529 NDSEENNGNSDIEDD 573
EE+ GNS +D+
Sbjct: 2437 ESDEEDKGNSYSDDE 2451
>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
F36A2.13 protein.
Length = 2944
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 475 FMAEMNDSNAYNDDSKNKNDSEENNGNSDIEDDLSS 582
F E + S+ NDD + +D EE++ + D +DD S
Sbjct: 1687 FDGESSSSDDDNDDDDDDDDEEEDDDDDDDDDDEDS 1722
>Z74476-2|CAA98962.1| 200|Caenorhabditis elegans Hypothetical
protein W05B10.2 protein.
Length = 200
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 751 CPFYLDGDCKFSDEQCRYSH 810
C YL G C+F D +CR+SH
Sbjct: 139 CKNYLKGKCRFGD-KCRFSH 157
>Z98866-18|CAB11555.2| 387|Caenorhabditis elegans Hypothetical
protein Y49E10.21 protein.
Length = 387
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 217 KSNRYRQKMEDLESSLNQYKEQIKIVQQSLEATHDLKEKESLLTLQSDLNQ-LIELTRES 393
K N + D+ES N+YK I++V+ L+ + L K+ + + L + L E
Sbjct: 58 KKNELKNLKNDVESLKNEYKTYIEMVENGLKQS-GLDIKQVVQVFERVLEESLSEKRLAI 116
Query: 394 LATATSKHL 420
L+T S H+
Sbjct: 117 LSTIDSAHI 125
>Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical
protein T03F7.1 protein.
Length = 610
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 596 GVLFIIHTNGVXSLVYTMLWSARYXL 673
G+LF+ + +G+ L YT WS + L
Sbjct: 371 GLLFLAYPSGILQLPYTQFWSCLFFL 396
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 229 YRQKMEDLESSLNQYKEQIKIVQQSLEATHDLKEKESLLTLQSD 360
Y ++ME++ES ++Q E ++ + E KEKE + SD
Sbjct: 190 YNRRMEEMESEVDQQLELTEMKARQEERDRLTKEKEEMRQRMSD 233
>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
protein K09C4.10 protein.
Length = 1035
Score = 28.7 bits (61), Expect = 6.0
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 7/131 (5%)
Frame = +1
Query: 478 MAEMNDSNAYNDDSKNKNDSEENNGNSDIEDDLSSLLGMRCAVYHTHKWGGQPSLHNAMV 657
+AE + S K + +NG+S I+D + + + V T +P+L A +
Sbjct: 405 IAEKREDGTIEKGSDTKIEQNISNGSSRIDDTVEATDNVPTLVNTTPTEQTKPTLSYAKI 464
Query: 658 SSILXRAD------DDQFNDLKVQILFTH-PTHAEMLPCPFYLDGDCKFSDEQCRYSHGN 816
+ D D+ + Q L + T A +PC L G+ + S+ H N
Sbjct: 465 VEKFSKTDQQPAKSDNSSPSPRAQRLEQNLATSANTIPC---LSGNSENSENSYAPKHDN 521
Query: 817 VVQLSDLKEAI 849
+ + KE +
Sbjct: 522 AENVGEWKEVV 532
>DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein.
Length = 610
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 596 GVLFIIHTNGVXSLVYTMLWSARYXL 673
G+LF+ + +G+ L YT WS + L
Sbjct: 371 GLLFLAYPSGILQLPYTQFWSCLFFL 396
>AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transporter
protein protein.
Length = 610
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 596 GVLFIIHTNGVXSLVYTMLWSARYXL 673
G+LF+ + +G+ L YT WS + L
Sbjct: 371 GLLFLAYPSGILQLPYTQFWSCLFFL 396
>Z82268-4|CAB05199.1| 741|Caenorhabditis elegans Hypothetical
protein F52B11.3 protein.
Length = 741
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 682 DDQFNDLKVQILFTHPTHAEMLPCPFYLDGDCKFSDEQCRYSHGNVV 822
D +L V+ + PTH M Y D +C +C S GN+V
Sbjct: 173 DTSLCELSVEDKRSKPTHVRMSEKIDYYDNNCLSRQNRCGPSGGNLV 219
>Z81104-1|CAB70255.1| 329|Caenorhabditis elegans Hypothetical
protein M199.1 protein.
Length = 329
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 235 AGTDWIFITCAVTIFTI 185
A +WIFITC V +FT+
Sbjct: 204 AWNNWIFITCMVVLFTL 220
>Z49911-6|CAA90132.1| 831|Caenorhabditis elegans Hypothetical
protein M28.8 protein.
Length = 831
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 496 SNAYNDDSKNKNDSEENNGNSDIEDDLSSLL 588
SNA+ D +K +D +N NS DDL+ L+
Sbjct: 43 SNAFYDIAKGISDGLQNTPNSKTYDDLNDLI 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,420,608
Number of Sequences: 27780
Number of extensions: 347302
Number of successful extensions: 1076
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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