Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_I24
         (1101 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   5.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = +3

Query: 834 PXXPP--PPPXPXQXPPQXQXGXXAXPPRP 917
           P  PP  PP  P   PP    G  A PP P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
 Frame = +3

Query: 828 PXPXXPPPPPXPXQXPPQXQ-XGXXAXPPRPXAXXXRGSXPP 950
           P    P P P P   PP     G    PP P      G  PP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.4 bits (48), Expect(2) = 5.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 828 PXPXXPPPPPXPXQ 869
           P P  PPPP  P Q
Sbjct: 236 PAPPPPPPPTLPPQ 249



 Score = 21.4 bits (43), Expect(2) = 5.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 843 PPPPPXPXQXP 875
           PPPP  P Q P
Sbjct: 273 PPPPATPSQPP 283


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +3

Query: 828  PXPXXPPPPPXPXQXPPQXQXGXXAXP-PRP 917
            P P   PP P P   PP  +    A P P+P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,412,996
Number of Sequences: 5004
Number of extensions: 10520
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 581717144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)