Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_I22
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0080 + 587674-588510                                             33   0.30 
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225           31   1.6  
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938     29   3.7  
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060     29   6.4  

>07_01_0080 + 587674-588510
          Length = 278

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -3

Query: 661 GGXGXXRXKKXPPPPRXXGGXXXXXXXXXPPPPP 560
           GG G  R    PPPP    G         PPPPP
Sbjct: 83  GGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPPP 116



 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = -3

Query: 664 GGGXGXXRXKKXPPPPRXXGGXXXXXXXXXPPPPP 560
           GG     R    PPPP   G          PPPPP
Sbjct: 83  GGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPPPP 117


>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
          Length = 467

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = -3

Query: 664 GGGXGXXRXKKXPPP-PRXXGGXXXXXXXXXPPPPP 560
           GGG      K  PPP PR  G          PPPPP
Sbjct: 26  GGGFSPTAAKPPPPPSPRANGTAAAAKPSASPPPPP 61


>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
          Length = 331

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 174 FFFFXXGFXFFFLIKKQYLFSQIVFLNSIVRAMTNKLMPNNLNLKEFPI 28
           FFFF   F FFF     + F +   ++S  R+    L  N   L  +P+
Sbjct: 67  FFFFFFFFFFFFFFFFFFFFDRASCVSSYSRSQVELLAENPAVLARYPV 115


>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
          Length = 794

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 358 GGGGXXXPKXXKXXXXGXPPPPP 426
           GGGG   P+  K      PPPPP
Sbjct: 22  GGGGAGYPRGHKQLYAPPPPPPP 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,670,625
Number of Sequences: 37544
Number of extensions: 374717
Number of successful extensions: 794
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)