Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_I22
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.3  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    24   9.9  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 628 PPPPRXXGGXXXXXXXXXPPPPP 560
           PPPP   GG         PPPPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPP 748



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 628 PPPPRXXGGXXXXXXXXXPPPPP 560
           PPPP   GG         PPPPP
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPP 764


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 628 PPPPRXXGGXXXXXXXXXPPPPP 560
           PPPP   GG         PPPPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPP 748



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 628 PPPPRXXGGXXXXXXXXXPPPPP 560
           PPPP   GG         PPPPP
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPP 764


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 628 PPPPRXXGGXXXXXXXXXPPPPP 560
           PPPP   GG         PPPPP
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPP 331



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 628 PPPPRXXGGXXXXXXXXXPPPPP 560
           PPPP   GG         PPPPP
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPP 347


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 24.2 bits (50), Expect(2) = 9.9
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = -3

Query: 628  PPPPRXXGGXXXXXXXXXPPPPPXXXK 548
            PPPP              PPPPP   K
Sbjct: 1341 PPPPPPPPSDDLTPVPPPPPPPPTMSK 1367



 Score = 21.8 bits (44), Expect(2) = 9.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 574  PPPPPXXXKKKKK 536
            PPPPP    ++KK
Sbjct: 1390 PPPPPPLPSEEKK 1402


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,818,819
Number of Sequences: 27780
Number of extensions: 178553
Number of successful extensions: 475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)