Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_I21
         (942 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   459   e-131
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   445   e-127
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   341   6e-96
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   308   5e-86
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    38   2e-04
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   4.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   5.3  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  459 bits (1132), Expect = e-131
 Identities = 216/223 (96%), Positives = 218/223 (97%)
 Frame = +2

Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 292
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 293 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 472
           DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120

Query: 473 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 652
           GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKK
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKK 180

Query: 653 IGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEXKL 781
           IGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKE K+
Sbjct: 181 IGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKV 223



 Score = 62.9 bits (146), Expect = 4e-12
 Identities = 34/48 (70%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
 Frame = +1

Query: 787 KCLIEALDAILPPARPTDKPLRXPLQDVYK--SVVLVPXRRXXETGXL 924
           KCLIEALDAILPP RPTDK LR PLQDVYK   +  VP  R  ETG L
Sbjct: 226 KCLIEALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGR-VETGVL 272


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  445 bits (1096), Expect = e-127
 Identities = 207/220 (94%), Positives = 213/220 (96%)
 Frame = +2

Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 292
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 293 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 472
           DKLKAERERGITIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGI 120

Query: 473 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 652
           GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD T+PPYSE RFEEIKKEVSSYIKK
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKK 180

Query: 653 IGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKE 772
           IGYN A+VAFVPISGWHGDNMLEPS K PW+KGW+VERK+
Sbjct: 181 IGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKD 220



 Score = 59.3 bits (137), Expect = 5e-11
 Identities = 33/48 (68%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
 Frame = +1

Query: 787 KCLIEALDAILPPARPTDKPLRXPLQDVYK--SVVLVPXRRXXETGXL 924
           K LIEALDAILPP+RPTDK LR PLQDVYK   +  VP  R  ETG L
Sbjct: 226 KTLIEALDAILPPSRPTDKALRLPLQDVYKIGGIGTVPVGR-VETGIL 272


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  341 bits (838), Expect = 6e-96
 Identities = 160/166 (96%), Positives = 162/166 (97%)
 Frame = +2

Query: 284 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 463
           WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 464 AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 643
           AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSY
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120

Query: 644 IKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEXKL 781
           IKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKE K+
Sbjct: 121 IKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKV 166



 Score = 62.9 bits (146), Expect = 4e-12
 Identities = 34/48 (70%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
 Frame = +1

Query: 787 KCLIEALDAILPPARPTDKPLRXPLQDVYK--SVVLVPXRRXXETGXL 924
           KCLIEALDAILPP RPTDK LR PLQDVYK   +  VP  R  ETG L
Sbjct: 169 KCLIEALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGR-VETGVL 215


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  308 bits (756), Expect = 5e-86
 Identities = 144/150 (96%), Positives = 146/150 (97%)
 Frame = +2

Query: 332 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 511
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 512 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPI 691
           REHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPI
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 692 SGWHGDNMLEPSTKMPWFKGWQVERKEXKL 781
           SGWHGDNMLE S+KMPWFKGW VERKE K+
Sbjct: 121 SGWHGDNMLEVSSKMPWFKGWTVERKEGKV 150



 Score = 42.3 bits (95), Expect = 6e-06
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +1

Query: 787 KCLIEALDAILPPARPTDK 843
           KCLIEALDAILPP RPTDK
Sbjct: 153 KCLIEALDAILPPTRPTDK 171


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 37.5 bits (83), Expect = 2e-04
 Identities = 36/117 (30%), Positives = 52/117 (44%)
 Frame = +2

Query: 371 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 550
           VT +D PGH  FI     G    D  VL+VAA  G  E       QT +   +A    V 
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKE-------QTLQSIEMAKDAKV- 246

Query: 551 QLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE 721
            +IV +NK+D       + ++E  K  +   I+++G     +  V IS   G N+ E
Sbjct: 247 PIIVAINKIDKPNIDIIKVQYELAKHGI--VIEELG---GEIQCVKISALKGINLRE 298



 Score = 25.4 bits (53), Expect = 0.75
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 125 KTHINIVVIGHVDSGKST 178
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 134 INIVVIGHVDSGKST 178
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 356 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 457
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 356 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 457
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,272
Number of Sequences: 438
Number of extensions: 5262
Number of successful extensions: 22
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)