Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_I18
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    28   1.6  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    28   2.1  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   6.5  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    26   8.5  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    26   8.5  

>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 805 YLFKXVDADRSGYISVREF 861
           Y+F   DAD++GYI  +EF
Sbjct: 67  YVFNVFDADKNGYIDFKEF 85



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 544 VHNILDVDKDGLISYNDFLLFAERFKSLGHLDAK 645
           V N+ D DK+G I + +F+  A    S G L+ K
Sbjct: 68  VFNVFDADKNGYIDFKEFIC-ALSVTSRGELNDK 100


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 607 RTARSRCTRSAHPCPRLRYCGRYASCGARTQ 515
           R+  SRC +S   C R R CGR    G  ++
Sbjct: 339 RSRCSRCKKSKKGCDRQRPCGRCRDAGLNSE 369


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 717 IVRVYGAPLLLPCHLDDVGEFLRLLRVEVAKRLE 616
           ++  +   +LL C +  VG FL L  VEV+ RLE
Sbjct: 283 LIEFFPRHILLGC-IGGVGSFLVLTAVEVSSRLE 315


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -3

Query: 540 THLAAPELRPVQPLTLSVRIGIRFRIGLFPSVYFRSA--MLFAVTT 409
           TH+   +LRP       +  G  F +  FP+ +F S   + FA+ T
Sbjct: 204 THIILRDLRPAGSKKRVIPTGYGFNLVSFPNYFFESLGWLFFALLT 249


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 671 MMSVNSFACFASRWPRDLNLS-ANSK-KSLYEISPSLSTSKI 552
           + SV +    A  WP+ LNLS AN++  SL ++ P    +K+
Sbjct: 226 LQSVTAVTTLAQTWPKLLNLSLANNRITSLSDLDPWSPKTKL 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,644,150
Number of Sequences: 5004
Number of extensions: 75820
Number of successful extensions: 194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)