Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_I18
(911 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 30 2.9
05_01_0450 + 3577928-3579526,3579695-3579832 30 2.9
11_04_0170 + 14419523-14419843 29 3.9
05_05_0154 - 22774503-22774652,22774738-22774968,22775508-227756... 29 3.9
05_04_0165 - 18660021-18660130,18660553-18661045,18662860-18662994 29 3.9
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565... 29 3.9
06_03_0899 - 25776159-25776797,25776898-25777806,25779425-257795... 29 5.1
04_04_0276 + 24091360-24091464,24091580-24091713,24091813-240924... 29 6.8
09_06_0136 - 21074420-21074746,21075905-21077026 28 9.0
05_04_0126 + 18252594-18256922 28 9.0
01_06_0369 - 28794283-28794427,28794865-28795874 28 9.0
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 529 RKMRTVHNILDVDKDGLISY 588
RK+R++HN LD ++ GL+ Y
Sbjct: 11 RKLRSLHNALDCERSGLVRY 30
>05_01_0450 + 3577928-3579526,3579695-3579832
Length = 578
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 553 ILDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKEFTDIIK 675
+LD + DG +S ++F LF +R K L+ K E+ +I+K
Sbjct: 513 LLDANSDGSLSSDEFALFQKRVKLKTKLENKD-DEYKEILK 552
>11_04_0170 + 14419523-14419843
Length = 106
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 580 SAHPCPRLRYCGRYASCGARTQTGPAPYTQCQNRNQ 473
+A+P R+ Y RYAS T++ A Y C R Q
Sbjct: 56 AAYPRRRILYDSRYASYNGLTESKAACYGSCPGRGQ 91
>05_05_0154 -
22774503-22774652,22774738-22774968,22775508-22775675,
22775760-22775936,22776281-22776302,22776351-22776417,
22776583-22776774,22776819-22776962,22778421-22779102
Length = 610
Score = 29.5 bits (63), Expect = 3.9
Identities = 26/110 (23%), Positives = 49/110 (44%)
Frame = +1
Query: 535 MRTVHNILDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKEFTDIIKMTWEQQWGTIDPY 714
++ + ++D D DG++SY + +F S HL + + + + G +D
Sbjct: 442 IKDMFKVMDTDNDGIVSYEELKSGIAKFGS--HLAESEVQMLIEAVDTNGR---GALDYG 496
Query: 715 NFVTVEQYLEDMHHVLNDKTLKKKAHRWLPYLFKXVDADRSGYISVREFK 864
F+ V +L+ M N + L++ +LF D D +GYI E +
Sbjct: 497 EFLAVSLHLQRM---ANGEHLRR------AFLF--FDKDGNGYIEPEELQ 535
>05_04_0165 - 18660021-18660130,18660553-18661045,18662860-18662994
Length = 245
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 624 SWPPRREAGEGIHRHHQDDMGATMGHHRPVQFRDGGTILGG-HASRPQRQDSQEEGS 791
+W P R E + + G+ + RP+Q D G+ GG +RP++ +E GS
Sbjct: 140 AWRPTRSVEEAVDVATCEVDGSDVCGQRPLQVADAGSGKGGRRCARPRQAAHEEIGS 196
>04_04_0456 -
25355409-25355751,25356047-25356205,25356317-25356513,
25356602-25356794,25357044-25358287
Length = 711
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 624 SWPPRREAGEGIHRHHQDDMGATMGHHRPVQFRDGGTILGGHASRPQRQDSQEEGS--PL 797
S PP R+A + H H + HH+ + R +L A+R + D +++G+ PL
Sbjct: 266 STPPERKA-DTHHSHRRGIRHKQQQHHQHPRRRKDTVLLAAAAARQEAPDRRDDGAAMPL 324
Query: 798 AALSV 812
A ++
Sbjct: 325 PAATI 329
>06_03_0899 -
25776159-25776797,25776898-25777806,25779425-25779592,
25779703-25779890,25779993-25780137,25780566-25780775
Length = 752
Score = 29.1 bits (62), Expect = 5.1
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +1
Query: 529 RKMRTVHNILDVDKDGLISYNDFL--LFAERFKSLGHLDAKQAKEFTDIIKMTWEQ---- 690
RKMR H IL + GL+ N L F ++ L + K ++E + II T+E+
Sbjct: 177 RKMREEHKILKLMLGGLLEQNGVLKRAFLKQHNRLNDYEKKMSQERSQIID-TYEKEIKA 235
Query: 691 -QWGTIDPYNFVTVEQYL 741
Q+ T +EQYL
Sbjct: 236 LQFATTAKLKQRNMEQYL 253
>04_04_0276 +
24091360-24091464,24091580-24091713,24091813-24092454,
24092858-24093044
Length = 355
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -2
Query: 577 AHPCPRLRYCGR-YASCGARTQTGPAPYTQCQNRNQIPNRAVSFC 446
A PC LR R YA+CGAR T+C+ Q+ S C
Sbjct: 231 APPCRGLRLLMRHYATCGARKAAPGGGCTRCKRMVQLFRLHASVC 275
>09_06_0136 - 21074420-21074746,21075905-21077026
Length = 482
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 705 RPVQFRDGGTILGGHASRPQRQDSQEEGSPLAALSVQGRRRRPL 836
R F DGG GG + + ++ G LAA+ G+R++ L
Sbjct: 69 RVFTFVDGGGAAGGESGEERDAKTEALGEVLAAVRASGKRKQGL 112
>05_04_0126 + 18252594-18256922
Length = 1442
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 369 IAGDHRVASQLIKTLLQQTTWPTGNRQKETAR 464
I +H++A +++ LL+ + P GN KE A+
Sbjct: 451 ILNNHKIALDIVRELLRWSQLPEGNSVKELAK 482
>01_06_0369 - 28794283-28794427,28794865-28795874
Length = 384
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 526 RRKMRTVHNILDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKEFTD 666
++KM D+D D +S +DFL++ + K +G +D K +D
Sbjct: 318 QKKMDNEPLAADLDHDASVSKSDFLIY--KLKEIGKIDDKDIAMISD 362
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,956,947
Number of Sequences: 37544
Number of extensions: 562072
Number of successful extensions: 1533
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -