Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_I11
         (944 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    27   5.1  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   6.7  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    26   6.7  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    26   8.9  

>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 122 NYWLIFALIVLVCAIIMISATFEANILACAILGGYAVIYPIDYYI---GSNLKYI 277
           ++W +FA  ++ CA+I++S  F    +  AIL     I+ +  YI   G  LKY+
Sbjct: 227 DHWQMFAHHIVTCALIILSYGFNFLRVGNAIL----YIFDLSDYILSGGKMLKYL 277


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -2

Query: 895  KXFKSSELRHLNIYITITITDMLNKI*IHKYFS-*NINKRTTI*TYTLLKLF*CPDYILK 719
            K  K+ +L   N+Y  +    +L KI  +KY S  +I+K   + +   LKL    D +L+
Sbjct: 868  KVLKNPKLSSSNVYDYLPAFRLLTKIEYYKYQSLRSIDKAQELLSNLGLKLKEPTDDVLR 927

Query: 718  LYYKDLKSK 692
             +Y  L +K
Sbjct: 928  EFYDRLSTK 936


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = -2

Query: 439 EGRSAVISVVLVGETCY 389
           EG+S +++VV++G +CY
Sbjct: 279 EGKSKIMNVVIMGRSCY 295


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 435 PSPLHLGASELDPHPSPDSPHETPVLATK 521
           PSPL +G    +      S  E PVLATK
Sbjct: 529 PSPLLVGTPSKESLKEASSDDELPVLATK 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,126,589
Number of Sequences: 5004
Number of extensions: 60203
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)