Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_I11
         (944 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-11|AAA68342.3|  824|Caenorhabditis elegans Hypothetical p...    34   0.13 

>U28928-11|AAA68342.3|  824|Caenorhabditis elegans Hypothetical
           protein C44B7.11 protein.
          Length = 824

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
 Frame = +2

Query: 122 NYWLIFALIVLV----CAIIMISATFEANILACAIL----GGYAVIYPIDYYIGSNLKYI 277
           N WL+ + +       C++I     F   I+ C ++    G + +IYP+   I   +  +
Sbjct: 270 NQWLLNSYLEAAIHPHCSVIGQEVGFSFKIIKCELIVTISGLFVIIYPLS--IAHLVNML 327

Query: 278 LINTMRRATVPNFKSATLVLNYQYKDLVLTLLWASLTVTSFAYQYYTNYG 427
            I T+       F S T +     +D VLT+L  +L + +  +     YG
Sbjct: 328 TICTVIALMSHRFYSKTFITFLALRDYVLTILTIALVLKAMTFMSLFTYG 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,078,622
Number of Sequences: 27780
Number of extensions: 326916
Number of successful extensions: 858
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)