Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_I11
         (944 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   1.3  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   9.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   9.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 448 WRGEGRSAVISVVLVGETCYG 386
           W G G   + +VVL G TC G
Sbjct: 563 WGGIGVVVLFAVVLAGATCLG 583


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 606 KSPKNLLSPNINAIVGNYQNYLSSLRYCILDFKSL 710
           K PK + S + N    NY N    L Y I++ + +
Sbjct: 310 KEPKIISSLSNNYNYNNYNNNYKPLYYNIINIEQI 344


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 42  FVESWIPYGITVLLR--HTR*LVFPGRTSI 125
           +V SW PYG+  ++     + L+ PG T I
Sbjct: 283 YVLSWTPYGVMSMIGAFGNKALLTPGVTMI 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,460
Number of Sequences: 438
Number of extensions: 4838
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)