Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_I09
(925 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT022126-1|AAY51521.1| 712|Drosophila melanogaster IP08939p pro... 31 2.9
AE014298-1977|AAF48333.2| 1103|Drosophila melanogaster CG32611-P... 31 2.9
AB235207-1|BAF31332.1| 1089|Drosophila melanogaster CG32611 prot... 31 2.9
AY058599-1|AAL13828.1| 773|Drosophila melanogaster LD29226p pro... 30 3.9
AE014298-2775|AAF48890.1| 722|Drosophila melanogaster CG7095-PA... 30 3.9
AE013599-3146|AAF46686.2| 1215|Drosophila melanogaster CG4266-PA... 30 3.9
AF069997-1|AAC62234.1| 1027|Drosophila melanogaster CLOCK protein. 30 5.2
AF067207-1|AAD10630.1| 1023|Drosophila melanogaster CLOCK protein. 30 5.2
AF065133-1|AAC39101.1| 1015|Drosophila melanogaster CLOCK protein. 30 5.2
AE014296-1322|AAX52754.1| 961|Drosophila melanogaster CG7391-PF... 30 5.2
AE014296-1321|AAX52753.1| 1027|Drosophila melanogaster CG7391-PD... 30 5.2
AE014296-1320|AAS65057.1| 1027|Drosophila melanogaster CG7391-PC... 30 5.2
AE014296-1319|AAN12019.1| 1023|Drosophila melanogaster CG7391-PB... 30 5.2
AE014296-1318|AAF50516.1| 1023|Drosophila melanogaster CG7391-PA... 30 5.2
AE014297-4641|AAN14249.1| 659|Drosophila melanogaster CG31019-P... 29 6.8
AE014296-778|AAX52730.2| 660|Drosophila melanogaster CG33545-PA... 29 6.8
>BT022126-1|AAY51521.1| 712|Drosophila melanogaster IP08939p
protein.
Length = 712
Score = 30.7 bits (66), Expect = 2.9
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 346 SSASSLTDSAAPGSVRLRGTGSAHSKAVIRVSXESGG*RRK 468
SS+SS+T +AA + +G AHS+ S +GG +R+
Sbjct: 149 SSSSSVTSAAAAAAAAASASGVAHSEEATSSSSSTGGQKRE 189
>AE014298-1977|AAF48333.2| 1103|Drosophila melanogaster CG32611-PB
protein.
Length = 1103
Score = 30.7 bits (66), Expect = 2.9
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 346 SSASSLTDSAAPGSVRLRGTGSAHSKAVIRVSXESGG*RRK 468
SS+SS+T +AA + +G AHS+ S +GG +R+
Sbjct: 193 SSSSSVTSAAAAAAAAASASGVAHSEEATSSSSSTGGQKRE 233
>AB235207-1|BAF31332.1| 1089|Drosophila melanogaster CG32611
protein.
Length = 1089
Score = 30.7 bits (66), Expect = 2.9
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 346 SSASSLTDSAAPGSVRLRGTGSAHSKAVIRVSXESGG*RRK 468
SS+SS+T +AA + +G AHS+ S +GG +R+
Sbjct: 238 SSSSSVTSAAAAAAAAASASGVAHSEEATSSSSSTGGQKRE 278
>AY058599-1|AAL13828.1| 773|Drosophila melanogaster LD29226p
protein.
Length = 773
Score = 30.3 bits (65), Expect = 3.9
Identities = 22/80 (27%), Positives = 33/80 (41%)
Frame = -1
Query: 862 GFTGXGLKTIVTG*GAAVGLNGGFVHTAQLGANDLHRTEIPTA*XMRKRHASRREKGGQV 683
G +G G++ + G G G G + G N+ R P + R E+GG++
Sbjct: 493 GQSGGGVRGVGGGGGGGPGGRGRWSDDEDEGGNNFKRRGGPGGPGGNR---FRGERGGEM 549
Query: 682 SGKRQGRNRRAHEGASRGKR 623
R+G N R G R R
Sbjct: 550 MDDRRGNNSRGGRGGPREDR 569
>AE014298-2775|AAF48890.1| 722|Drosophila melanogaster CG7095-PA
protein.
Length = 722
Score = 30.3 bits (65), Expect = 3.9
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Frame = +1
Query: 340 GRSSASSLTDSAAPGSV-RLRG-----TGSAHSKAVIRVSXESG 453
G S+ SS+ + PG++ R RG TGSAH AVI V+ ++G
Sbjct: 661 GTSAGSSMMQAPPPGNLARRRGSDRSLTGSAHELAVIGVNKDAG 704
>AE013599-3146|AAF46686.2| 1215|Drosophila melanogaster CG4266-PA
protein.
Length = 1215
Score = 30.3 bits (65), Expect = 3.9
Identities = 22/80 (27%), Positives = 33/80 (41%)
Frame = -1
Query: 862 GFTGXGLKTIVTG*GAAVGLNGGFVHTAQLGANDLHRTEIPTA*XMRKRHASRREKGGQV 683
G +G G++ + G G G G + G N+ R P + R E+GG++
Sbjct: 935 GQSGGGVRGVGGGGGGGPGGRGRWSDDEDEGGNNFKRRGGPGGPGGNR---FRGERGGEM 991
Query: 682 SGKRQGRNRRAHEGASRGKR 623
R+G N R G R R
Sbjct: 992 MDDRRGNNSRGGRGGPREDR 1011
>AF069997-1|AAC62234.1| 1027|Drosophila melanogaster CLOCK protein.
Length = 1027
Score = 29.9 bits (64), Expect = 5.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 798 PFSPTAAPYPVTIVLSPXPV 857
P P AP+PV VLSP PV
Sbjct: 630 PMQPVIAPFPVAPVLSPLPV 649
>AF067207-1|AAD10630.1| 1023|Drosophila melanogaster CLOCK protein.
Length = 1023
Score = 29.9 bits (64), Expect = 5.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 798 PFSPTAAPYPVTIVLSPXPV 857
P P AP+PV VLSP PV
Sbjct: 626 PMQPVIAPFPVAPVLSPLPV 645
>AF065133-1|AAC39101.1| 1015|Drosophila melanogaster CLOCK protein.
Length = 1015
Score = 29.9 bits (64), Expect = 5.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 798 PFSPTAAPYPVTIVLSPXPV 857
P P AP+PV VLSP PV
Sbjct: 626 PMQPVIAPFPVAPVLSPLPV 645
>AE014296-1322|AAX52754.1| 961|Drosophila melanogaster CG7391-PF,
isoform F protein.
Length = 961
Score = 29.9 bits (64), Expect = 5.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 798 PFSPTAAPYPVTIVLSPXPV 857
P P AP+PV VLSP PV
Sbjct: 564 PMQPVIAPFPVAPVLSPLPV 583
>AE014296-1321|AAX52753.1| 1027|Drosophila melanogaster CG7391-PD,
isoform D protein.
Length = 1027
Score = 29.9 bits (64), Expect = 5.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 798 PFSPTAAPYPVTIVLSPXPV 857
P P AP+PV VLSP PV
Sbjct: 630 PMQPVIAPFPVAPVLSPLPV 649
>AE014296-1320|AAS65057.1| 1027|Drosophila melanogaster CG7391-PC,
isoform C protein.
Length = 1027
Score = 29.9 bits (64), Expect = 5.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 798 PFSPTAAPYPVTIVLSPXPV 857
P P AP+PV VLSP PV
Sbjct: 630 PMQPVIAPFPVAPVLSPLPV 649
>AE014296-1319|AAN12019.1| 1023|Drosophila melanogaster CG7391-PB,
isoform B protein.
Length = 1023
Score = 29.9 bits (64), Expect = 5.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 798 PFSPTAAPYPVTIVLSPXPV 857
P P AP+PV VLSP PV
Sbjct: 626 PMQPVIAPFPVAPVLSPLPV 645
>AE014296-1318|AAF50516.1| 1023|Drosophila melanogaster CG7391-PA,
isoform A protein.
Length = 1023
Score = 29.9 bits (64), Expect = 5.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 798 PFSPTAAPYPVTIVLSPXPV 857
P P AP+PV VLSP PV
Sbjct: 626 PMQPVIAPFPVAPVLSPLPV 645
>AE014297-4641|AAN14249.1| 659|Drosophila melanogaster CG31019-PA
protein.
Length = 659
Score = 29.5 bits (63), Expect = 6.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 688 QVSGKRQGRNRRAHEGASRGK 626
+V KR+GRNR AH SR K
Sbjct: 491 EVRSKRRGRNRHAHHSRSRSK 511
>AE014296-778|AAX52730.2| 660|Drosophila melanogaster CG33545-PA
protein.
Length = 660
Score = 29.5 bits (63), Expect = 6.8
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +2
Query: 629 PPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSHXSRCRYLSSV 757
P GSS + SPVP PL SA +P+ +V L+ C SV
Sbjct: 263 PSGSSFMPSPVPPAPLPA--SASVPAPTVPLATQISCPSAPSV 303
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,372,763
Number of Sequences: 53049
Number of extensions: 867574
Number of successful extensions: 2349
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2347
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4546383066
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -