Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_I05
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    30   0.54 
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    29   0.72 
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    28   2.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.8  

>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +2

Query: 458 KKPNYQTQPNPGRSPQPEQMQVMLHDKNFPCKTRTKDKYRVVYSDHQRLELEKEFHYSRY 637
           KK N+++      SP     Q     ++        DK R  + + QRL+ EKEF  SR 
Sbjct: 262 KKRNHKSSYKRSLSPSTRYHQDRPDKRHGTYSLEEIDKQRKEFENRQRLQKEKEFQKSRE 321

Query: 638 ITIR 649
             ++
Sbjct: 322 AALK 325


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 120 HTRRHKQHHRSDHETRYGR 64
           H+RRH+ HH    E+++GR
Sbjct: 24  HSRRHRHHHSRHRESKHGR 42


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 795 ARATPPRDNVTPPADDERYDAPPP 866
           A A PPR    PPA      APPP
Sbjct: 23  AAALPPRTMAPPPAPSRVQQAPPP 46


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 386  LLDSPNPPWPATAYRLSLVLLVPFSENDADPES-IPP*PVRRSMRTTVALPSSDA 225
            +L SP    P   +  S  L  P S + A P + +PP P   S    V LPS+DA
Sbjct: 978  ILSSPTSE-PPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADA 1031


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,296,297
Number of Sequences: 5004
Number of extensions: 63541
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)