Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_I02
         (958 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...   146   4e-36
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...   146   4e-36
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   3.0  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    27   3.0  
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    26   6.8  
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    26   9.0  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  146 bits (354), Expect = 4e-36
 Identities = 81/175 (46%), Positives = 102/175 (58%), Gaps = 4/175 (2%)
 Frame = +1

Query: 88  LREYEVIXP*APVRRTSPNLPXYKMRIXSPDPIVAKSRXWYFLRQLKKFKKTTGEIVXXX 267
           L+EY+V+    P     P    ++MR+ +P+  VAKSR WYFL+ + K KK TGEIV   
Sbjct: 3   LKEYQVVGRKVPTEH-EPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAIN 61

Query: 268 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 447
                       FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+
Sbjct: 62  EISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIR 121

Query: 448 IIK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR---VHHYKRLNTFAYKRPSTYF 600
           I+K VEV K    RR  VKQ  N  ++FPLP R   V        FA  RPST++
Sbjct: 122 ILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  146 bits (354), Expect = 4e-36
 Identities = 81/175 (46%), Positives = 102/175 (58%), Gaps = 4/175 (2%)
 Frame = +1

Query: 88  LREYEVIXP*APVRRTSPNLPXYKMRIXSPDPIVAKSRXWYFLRQLKKFKKTTGEIVXXX 267
           L+EY+V+    P     P    ++MR+ +P+  VAKSR WYFL+ + K KK TGEIV   
Sbjct: 3   LKEYQVVGRKVPTEH-EPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAIN 61

Query: 268 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 447
                       FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+
Sbjct: 62  EISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIR 121

Query: 448 IIK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR---VHHYKRLNTFAYKRPSTYF 600
           I+K VEV K    RR  VKQ  N  ++FPLP R   V        FA  RPST++
Sbjct: 122 ILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 176 RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRK---APSRLRILVSGYAMSL 331
           ++   P++V   S D+ + SRRP +  S  RKF  K    PS  + L  G   SL
Sbjct: 297 KVSKRPSIVRQDSHDSNKLSRRPTINTSFDRKFSPKLTRTPSLTKSLDPGTPTSL 351


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +3

Query: 351 VP*IP*PECRWSCHSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIP 530
           +P  P P    +  +VLQ++       SS +      SNQ   +SPST  +    HH   
Sbjct: 68  LPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSS 127

Query: 531 IAQTCAPLQET 563
            +   +P   T
Sbjct: 128 SSYAVSPTSPT 138


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 176 RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 304
           ++ + PN +S IS  N R + R LVK  L+ +      SR RI
Sbjct: 21  KVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRI 63


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 176 RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 304
           ++ + PN +S IS  N R + R L+K  L+ +      SR RI
Sbjct: 21  KVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRI 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,425
Number of Sequences: 5004
Number of extensions: 51532
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)