Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_I02
(958 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 142 4e-34
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 142 5e-34
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 124 1e-28
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255 30 2.4
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 29 4.1
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 29 4.1
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 142 bits (344), Expect = 4e-34
Identities = 71/174 (40%), Positives = 100/174 (57%), Gaps = 3/174 (1%)
Frame = +1
Query: 85 QLREYEVIXP*APVRRTSPNLPXYKMRIXSPDPIVAKSRXWYFLRQLKKFKKTTGEIVXX 264
+ +Y+V+ P T + Y+M++ + + + AKS+ WYFLR+LKK KK+ G+I+
Sbjct: 5 RFHQYQVVGRGLPTP-TDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAI 63
Query: 265 XXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSI 444
N+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R I
Sbjct: 64 NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 123
Query: 445 QIIKVEVIKAAACRRPQVKQFHNSTIRFPL---PKRVHHYKRLNTFAYKRPSTY 597
QIIK + C+R KQFH S I+FPL R K TF RP+ +
Sbjct: 124 QIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 142 bits (343), Expect = 5e-34
Identities = 67/151 (44%), Positives = 92/151 (60%), Gaps = 3/151 (1%)
Frame = +1
Query: 154 YKMRIXSPDPIVAKSRXWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESR 333
Y+M++ + + + AKS+ WYFLR+LKK KK+ G+++ N+GIWLRY+SR
Sbjct: 27 YRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSR 86
Query: 334 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHN 513
+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK + C+R KQFHN
Sbjct: 87 TGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHN 146
Query: 514 STIRFPL---PKRVHHYKRLNTFAYKRPSTY 597
S I+FPL R K TF RP+ +
Sbjct: 147 SNIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 124 bits (298), Expect = 1e-28
Identities = 60/133 (45%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
Frame = +1
Query: 208 YFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGA 387
YFLR+LKK KK+ G+++ N+GIWLRY+SR+G HNMY+EYRD ++ GA
Sbjct: 62 YFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 121
Query: 388 VTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPL---PKRVHHYK 558
V Q Y +M +RHR R IQIIK + C+R KQFHN +I+FPL R K
Sbjct: 122 VEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYRKVRPPTRK 181
Query: 559 RLNTFAYKRPSTY 597
TF RP+ +
Sbjct: 182 LKTTFKASRPNLF 194
>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
Length = 965
Score = 30.3 bits (65), Expect = 2.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 497 SNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM*KW 649
S++ TT+ S P++C+ D R R +S C H T +PM +W
Sbjct: 410 SSAMTTSAMQSRSPSLCSACLDGY-ERERADMASSPGCGALHATEQPMSQW 459
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 29.5 bits (63), Expect = 4.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 423 QSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAPLQET 563
Q P S T+YQ SN + Q + HHQ+PI + + T
Sbjct: 950 QCPQSTETNYQRCSNGETESNQPVSQNELEDHHQVPITASSSTNNST 996
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 29.5 bits (63), Expect = 4.1
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +3
Query: 441 NTDYQSGSNQGCC----VSPSTGQTVPQQHHQIPIAQTCAP 551
N + G N+G P+ QT P+QH Q+PI T P
Sbjct: 406 NNHHHQGGNRGGAHHVGTPPNQQQTKPEQHPQLPIGATKQP 446
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,597,438
Number of Sequences: 37544
Number of extensions: 351508
Number of successful extensions: 868
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -