Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_I02
         (958 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   178   4e-45
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      30   2.1  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  178 bits (434), Expect = 4e-45
 Identities = 85/177 (48%), Positives = 115/177 (64%), Gaps = 1/177 (0%)
 Frame = +1

Query: 73  KAKGQ-LREYEVIXP*APVRRTSPNLPXYKMRIXSPDPIVAKSRXWYFLRQLKKFKKTTG 249
           KA G+ L EY V+    P  +  P  P +KM+I + + ++AKSR WYF+  L++ KK  G
Sbjct: 4   KALGETLNEYVVVGRKIPTEK-EPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANG 62

Query: 250 EIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRA 429
           EI+              N+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA
Sbjct: 63  EILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRA 122

Query: 430 RAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 600
           +A  I I+KV+ +KA   +R  +K FH++ IRFPLP RV   K L+ F   R +T+F
Sbjct: 123 QADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 494 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM 640
           R  SST  P+DS C  +  +TR   P  +R   ++     + H  + PM
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPM 261


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 494 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM 640
           R  SST  P+DS C  +  +TR   P  +R   ++     + H  + PM
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPM 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,799,698
Number of Sequences: 27780
Number of extensions: 299408
Number of successful extensions: 739
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)