Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_H23
         (916 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0168 + 17953848-17954585                                         31   1.7  
12_02_1036 - 25587313-25587890,25589209-25589272,25589356-255894...    30   2.2  
07_01_0702 + 5288588-5288889,5289257-5289407,5289543-5289725,529...    29   3.9  

>03_04_0168 + 17953848-17954585
          Length = 245

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = +3

Query: 51  TRAAQRDCASXTRXATRPP-----QHVAGVAWARMRRPA 152
           T AAQ+  AS  R    PP       V+  +W RMRRPA
Sbjct: 119 TAAAQQQGASAARATRAPPPAPAASRVSSFSWGRMRRPA 157


>12_02_1036 -
           25587313-25587890,25589209-25589272,25589356-25589448,
           25589533-25589683,25590474-25590539,25590594-25590907
          Length = 421

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 99  RPPQHVAGVAWARMRRPA--ASSDVARPLDWPRY*RDSPRRLATRQTRISI 245
           RP + V G AW  +RRP+   +SDV      P++ RD+ ++L     R SI
Sbjct: 318 RPTEEVRGEAWHYLRRPSEDGTSDVMEGHADPKFQRDN-KQLENHVDRYSI 367


>07_01_0702 +
           5288588-5288889,5289257-5289407,5289543-5289725,
           5290063-5290137,5290248-5290403,5290502-5290597,
           5290855-5290985,5291057-5291138,5291237-5291586,
           5293029-5293234,5293254-5293570
          Length = 682

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -3

Query: 245 YGYARLS-GRESSRRVTSVARPVQRPSDVAGRRRPSHPGPR-DPSHMLGRSRCXAGXT 78
           Y  A++S  R S + V   A   Q P   A RR    PGP   P+   G+ R  AG T
Sbjct: 501 YAAAQISTSRSSQQTVGQQATNWQNPRTAASRRGSIEPGPAPKPAARRGKPRRSAGRT 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,887,413
Number of Sequences: 37544
Number of extensions: 382738
Number of successful extensions: 1070
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)