Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_H19
         (986 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.33 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 35/149 (23%), Positives = 38/149 (25%), Gaps = 7/149 (4%)
 Frame = +3

Query: 552  PXPXXSRDQNRWMPPXXXPSXXXA--PVXRGGXP*PXPGGLXXRPTPXXXXPXXXLRPXP 725
            P P  S       PP   PS      P   G  P P P G+   P P    P        
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVA 1110

Query: 726  XVPXPRSXXLRPTXXP---XRXLXXRXAERPXSIQXXLXXXRP-PGXVPRXPXXAXXXPP 893
              P P      P   P      +       P           P P   P  P  +   PP
Sbjct: 1111 VPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170

Query: 894  XDTXSXPXPNXXXPPXRSGP-PPXXXXPP 977
                S   P    P     P PP    PP
Sbjct: 1171 VPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 22/98 (22%), Positives = 27/98 (27%)
 Frame = +3

Query: 684 PXXXXPXXXLRPXPXVPXPRSXXLRPTXXPXRXLXXRXAERPXSIQXXLXXXRPPGXVPR 863
           P    P   LRP    P PR     P+      +  +    P S+        P    P 
Sbjct: 128 PAPPTPQSELRPPTSAP-PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPS 186

Query: 864 XPXXAXXXPPXDTXSXPXPNXXXPPXRSGPPPXXXXPP 977
            P      PP      P P    P   +   P    PP
Sbjct: 187 APSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPP 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,731,290
Number of Sequences: 5004
Number of extensions: 18085
Number of successful extensions: 33
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)