Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_H19
(986 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 33 0.24
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 33 0.31
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 33 0.31
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.31
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.31
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.55
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.55
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.2
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 30 2.9
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 30 2.9
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 30 2.9
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 29 3.9
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 6.7
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 29 6.7
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 6.7
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 6.7
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 6.7
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 8.9
AL132949-22|CAB70112.2| 603|Caenorhabditis elegans Hypothetical... 28 8.9
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 28 8.9
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 33.5 bits (73), Expect = 0.24
Identities = 31/117 (26%), Positives = 37/117 (31%), Gaps = 6/117 (5%)
Frame = +2
Query: 650 ASPRRXXXPPHXXXXPX---PXXSXXXA*XARXSVP---PPAXDPXXXAXPXXXAXXTPX 811
A P++ PP P P + A + +VP PP A P P
Sbjct: 43 AQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPY 102
Query: 812 FHPXXPXXTXPPXXGXPXPQXXXPXXXX*HLXPPPTKXXPXPXXXWPPPXXXXXPSP 982
P PP P PQ P PPP P P +PPP P P
Sbjct: 103 PQHAVPAPAPPPA---PYPQHAVPAPAPYQQQPPP----PPPPPHYPPPPPHYPPPP 152
Score = 30.3 bits (65), Expect = 2.2
Identities = 25/98 (25%), Positives = 28/98 (28%)
Frame = +2
Query: 644 PLASPRRXXXPPHXXXXPXPXXSXXXA*XARXSVPPPAXDPXXXAXPXXXAXXTPXFHPX 823
P +P P H P P + PPPA P A P P +P
Sbjct: 63 PAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYP-QHAVPAPAPPPAP--YPQ 119
Query: 824 XPXXTXPPXXGXPXPQXXXPXXXX*HLXPPPTKXXPXP 937
P P P P H PPP P P
Sbjct: 120 HAVPAPAPYQQQPPPPPPPP-----HYPPPPPHYPPPP 152
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 33.1 bits (72), Expect = 0.31
Identities = 22/67 (32%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Frame = +3
Query: 792 RXAERPXSIQXXLXXXRPPGXVPRXPXXAXXX-----PPXDTXSXPXPNXXXPPXRSGPP 956
R A P IQ PP P P P T S P P PP SG P
Sbjct: 749 RSASTPQPIQQQQSSIPPPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAP 808
Query: 957 PXXXXPP 977
P PP
Sbjct: 809 PPPPPPP 815
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 33.1 bits (72), Expect = 0.31
Identities = 22/67 (32%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Frame = +3
Query: 792 RXAERPXSIQXXLXXXRPPGXVPRXPXXAXXX-----PPXDTXSXPXPNXXXPPXRSGPP 956
R A P IQ PP P P P T S P P PP SG P
Sbjct: 749 RSASTPQPIQQQQSSIPPPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAP 808
Query: 957 PXXXXPP 977
P PP
Sbjct: 809 PPPPPPP 815
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 33.1 bits (72), Expect = 0.31
Identities = 21/71 (29%), Positives = 23/71 (32%)
Frame = -3
Query: 957 GGGHXXXGXGXXLVGGGXRCXXXXXGXXXWGXGXPXXGGXVX*GXXGWKXGVXXAXXXGX 778
GGG G G GGG C G G G GG G G G G
Sbjct: 84 GGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGS 143
Query: 777 AXXXGSXAGGG 745
+ G + GG
Sbjct: 144 SGGCGGGSSGG 154
Score = 32.7 bits (71), Expect = 0.41
Identities = 23/77 (29%), Positives = 24/77 (31%)
Frame = -3
Query: 975 GXXXXXGGGHXXXGXGXXLVGGGXRCXXXXXGXXXWGXGXPXXGGXVX*GXXGWKXGVXX 796
G GGG G G GGG C G G G GG G G G
Sbjct: 85 GGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCG-GGGGGGCGGGS 143
Query: 795 AXXXGXAXXXGSXAGGG 745
+ G G GGG
Sbjct: 144 SGGCGGGSSGGCGGGGG 160
Score = 32.3 bits (70), Expect = 0.55
Identities = 22/77 (28%), Positives = 23/77 (29%)
Frame = -3
Query: 975 GXXXXXGGGHXXXGXGXXLVGGGXRCXXXXXGXXXWGXGXPXXGGXVX*GXXGWKXGVXX 796
G GGG G G GGG C G G G GG G G
Sbjct: 92 GGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGS 151
Query: 795 AXXXGXAXXXGSXAGGG 745
+ G G GGG
Sbjct: 152 SGGCGGGGGGGCGGGGG 168
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/80 (27%), Positives = 23/80 (28%)
Frame = -3
Query: 981 GEGXXXXXGGGHXXXGXGXXLVGGGXRCXXXXXGXXXWGXGXPXXGGXVX*GXXGWKXGV 802
G G GGG G G GGG G G G GG G G
Sbjct: 96 GCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGC 155
Query: 801 XXAXXXGXAXXXGSXAGGGT 742
G G GGG+
Sbjct: 156 GGGGGGGCGGGGGGGCGGGS 175
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 33.1 bits (72), Expect = 0.31
Identities = 21/71 (29%), Positives = 23/71 (32%)
Frame = -3
Query: 957 GGGHXXXGXGXXLVGGGXRCXXXXXGXXXWGXGXPXXGGXVX*GXXGWKXGVXXAXXXGX 778
GGG G G GGG C G G G GG G G G G
Sbjct: 84 GGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGS 143
Query: 777 AXXXGSXAGGG 745
+ G + GG
Sbjct: 144 SGGCGGGSSGG 154
Score = 32.7 bits (71), Expect = 0.41
Identities = 23/77 (29%), Positives = 24/77 (31%)
Frame = -3
Query: 975 GXXXXXGGGHXXXGXGXXLVGGGXRCXXXXXGXXXWGXGXPXXGGXVX*GXXGWKXGVXX 796
G GGG G G GGG C G G G GG G G G
Sbjct: 85 GGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCG-GGGGGGCGGGS 143
Query: 795 AXXXGXAXXXGSXAGGG 745
+ G G GGG
Sbjct: 144 SGGCGGGSSGGCGGGGG 160
Score = 32.3 bits (70), Expect = 0.55
Identities = 22/77 (28%), Positives = 23/77 (29%)
Frame = -3
Query: 975 GXXXXXGGGHXXXGXGXXLVGGGXRCXXXXXGXXXWGXGXPXXGGXVX*GXXGWKXGVXX 796
G GGG G G GGG C G G G GG G G
Sbjct: 92 GGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGS 151
Query: 795 AXXXGXAXXXGSXAGGG 745
+ G G GGG
Sbjct: 152 SGGCGGGGGGGCGGGGG 168
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/80 (27%), Positives = 23/80 (28%)
Frame = -3
Query: 981 GEGXXXXXGGGHXXXGXGXXLVGGGXRCXXXXXGXXXWGXGXPXXGGXVX*GXXGWKXGV 802
G G GGG G G GGG G G G GG G G
Sbjct: 96 GCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGC 155
Query: 801 XXAXXXGXAXXXGSXAGGGT 742
G G GGG+
Sbjct: 156 GGGGGGGCGGGGGGGCGGGS 175
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.55
Identities = 23/81 (28%), Positives = 26/81 (32%)
Frame = +3
Query: 717 PXPXVPXPRSXXLRPTXXPXRXLXXRXAERPXSIQXXLXXXRPPGXVPRXPXXAXXXPPX 896
P P P P + P P + R P S PPG P P PP
Sbjct: 262 PVPP-PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP- 319
Query: 897 DTXSXPXPNXXXPPXRSGPPP 959
P P+ PP G PP
Sbjct: 320 -----PPPSRFGPPGMGGMPP 335
Score = 31.5 bits (68), Expect = 0.96
Identities = 27/114 (23%), Positives = 31/114 (27%), Gaps = 1/114 (0%)
Frame = +2
Query: 644 PLASPRRXXXPPHXXXXPXPXXSXXXA*XARXSVPPPAXDPXXXAXPXXXAXXTPX-FHP 820
P +P PP P P PPP P P P F P
Sbjct: 268 PSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGP 327
Query: 821 XXPXXTXPPXXGXPXPQXXXPXXXX*HLXPPPTKXXPXPXXXWPPPXXXXXPSP 982
PP P P P PPP + +PPP P+P
Sbjct: 328 PGMGGMPPP----PPPGMRYPGGMP---PPPPPRYPSAGPGMYPPPPPSRPPAP 374
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.55
Identities = 23/81 (28%), Positives = 26/81 (32%)
Frame = +3
Query: 717 PXPXVPXPRSXXLRPTXXPXRXLXXRXAERPXSIQXXLXXXRPPGXVPRXPXXAXXXPPX 896
P P P P + P P + R P S PPG P P PP
Sbjct: 272 PVPP-PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP- 329
Query: 897 DTXSXPXPNXXXPPXRSGPPP 959
P P+ PP G PP
Sbjct: 330 -----PPPSRFGPPGMGGMPP 345
Score = 31.5 bits (68), Expect = 0.96
Identities = 27/114 (23%), Positives = 31/114 (27%), Gaps = 1/114 (0%)
Frame = +2
Query: 644 PLASPRRXXXPPHXXXXPXPXXSXXXA*XARXSVPPPAXDPXXXAXPXXXAXXTPX-FHP 820
P +P PP P P PPP P P P F P
Sbjct: 278 PSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGP 337
Query: 821 XXPXXTXPPXXGXPXPQXXXPXXXX*HLXPPPTKXXPXPXXXWPPPXXXXXPSP 982
PP P P P PPP + +PPP P+P
Sbjct: 338 PGMGGMPPP----PPPGMRYPGGMP---PPPPPRYPSAGPGMYPPPPPSRPPAP 384
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/72 (27%), Positives = 21/72 (29%)
Frame = +2
Query: 743 VPPPAXDPXXXAXPXXXAXXTPXFHPXXPXXTXPPXXGXPXPQXXXPXXXX*HLXPPPTK 922
+PP P P T P P PP G P P P PPP
Sbjct: 719 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG----CPPPPPP 774
Query: 923 XXPXPXXXWPPP 958
P PPP
Sbjct: 775 PPPGGFKGGPPP 786
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Frame = +3
Query: 591 PPXXXPSXXXAPVXRGGXP*PXPGGL--XXRPTPXXXXPXXXLRPXPXVPXPRSXXLRPT 764
PP P P+ G P P PGGL P P P P P P P
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Query: 765 XXP 773
P
Sbjct: 786 PPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/72 (27%), Positives = 21/72 (29%)
Frame = +2
Query: 743 VPPPAXDPXXXAXPXXXAXXTPXFHPXXPXXTXPPXXGXPXPQXXXPXXXX*HLXPPPTK 922
+PP P P T P P PP G P P P PPP
Sbjct: 719 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG----CPPPPPP 774
Query: 923 XXPXPXXXWPPP 958
P PPP
Sbjct: 775 PPPGGFKGGPPP 786
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Frame = +3
Query: 591 PPXXXPSXXXAPVXRGGXP*PXPGGL--XXRPTPXXXXPXXXLRPXPXVPXPRSXXLRPT 764
PP P P+ G P P PGGL P P P P P P P
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Query: 765 XXP 773
P
Sbjct: 786 PPP 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/72 (27%), Positives = 21/72 (29%)
Frame = +2
Query: 743 VPPPAXDPXXXAXPXXXAXXTPXFHPXXPXXTXPPXXGXPXPQXXXPXXXX*HLXPPPTK 922
+PP P P T P P PP G P P P PPP
Sbjct: 302 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG----CPPPPPP 357
Query: 923 XXPXPXXXWPPP 958
P PPP
Sbjct: 358 PPPGGFKGGPPP 369
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Frame = +3
Query: 591 PPXXXPSXXXAPVXRGGXP*PXPGGL--XXRPTPXXXXPXXXLRPXPXVPXPRSXXLRPT 764
PP P P+ G P P PGGL P P P P P P P
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 368
Query: 765 XXP 773
P
Sbjct: 369 PPP 371
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = +3
Query: 843 PPGXVPRXPXXAXXXPPXDTXSXPXP--NXXXPPXRSGPPPXXXXP 974
PP P PP T S P P PP R+G PP P
Sbjct: 258 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 303
Score = 29.9 bits (64), Expect = 2.9
Identities = 28/105 (26%), Positives = 30/105 (28%), Gaps = 2/105 (1%)
Frame = +2
Query: 674 PPHXXXXPXPXXSXXXA*XARXSVPPPAXDPXXXAXPXXXAXXTPXFHPXXPXXTXPPXX 853
PP P P S PPP P + P P P PP
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPP---PAAGSPPPPRTGSPPP--PPTGSPPPPPAG 286
Query: 854 GXPXP-QXXXPXXXX*HLXPPPTKXXPXPXXXW-PPPXXXXXPSP 982
G P P + P PPT P P PPP P P
Sbjct: 287 GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 331
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +3
Query: 858 PRXPXXAXXXPPXDTXSXPXPNXXXPPXRSGPPPXXXXPP 977
P P A PP T S P P PP PPP PP
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPPPTGSPP----PPPAGGSPP 290
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = +3
Query: 843 PPGXVPRXPXXAXXXPPXDTXSXPXP--NXXXPPXRSGPPPXXXXP 974
PP P PP T S P P PP R+G PP P
Sbjct: 279 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 324
Score = 29.9 bits (64), Expect = 2.9
Identities = 28/105 (26%), Positives = 30/105 (28%), Gaps = 2/105 (1%)
Frame = +2
Query: 674 PPHXXXXPXPXXSXXXA*XARXSVPPPAXDPXXXAXPXXXAXXTPXFHPXXPXXTXPPXX 853
PP P P S PPP P + P P P PP
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPP---PAAGSPPPPRTGSPPP--PPTGSPPPPPAG 307
Query: 854 GXPXP-QXXXPXXXX*HLXPPPTKXXPXPXXXW-PPPXXXXXPSP 982
G P P + P PPT P P PPP P P
Sbjct: 308 GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 352
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +3
Query: 858 PRXPXXAXXXPPXDTXSXPXPNXXXPPXRSGPPPXXXXPP 977
P P A PP T S P P PP PPP PP
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPPPTGSPP----PPPAGGSPP 311
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = +3
Query: 843 PPGXVPRXPXXAXXXPPXDTXSXPXP--NXXXPPXRSGPPPXXXXP 974
PP P PP T S P P PP R+G PP P
Sbjct: 264 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 309
Score = 29.9 bits (64), Expect = 2.9
Identities = 28/105 (26%), Positives = 30/105 (28%), Gaps = 2/105 (1%)
Frame = +2
Query: 674 PPHXXXXPXPXXSXXXA*XARXSVPPPAXDPXXXAXPXXXAXXTPXFHPXXPXXTXPPXX 853
PP P P S PPP P + P P P PP
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPP---PAAGSPPPPRTGSPPP--PPTGSPPPPPAG 292
Query: 854 GXPXP-QXXXPXXXX*HLXPPPTKXXPXPXXXW-PPPXXXXXPSP 982
G P P + P PPT P P PPP P P
Sbjct: 293 GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 337
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +3
Query: 858 PRXPXXAXXXPPXDTXSXPXPNXXXPPXRSGPPPXXXXPP 977
P P A PP T S P P PP PPP PP
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPPPTGSPP----PPPAGGSPP 296
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/73 (27%), Positives = 23/73 (31%)
Frame = +1
Query: 742 GPXXCXRPXXPXAXXXXGXXNAPLPSXXASXNXAPXGXXPXXPXXRAXXXLXTPXPXPXQ 921
GP RP A G AP+P P G P + P
Sbjct: 762 GPSPVPRP----APAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRP 817
Query: 922 TPAXPPXXVAPPR 960
P PP +APPR
Sbjct: 818 GPGGPPPNMAPPR 830
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/73 (27%), Positives = 23/73 (31%)
Frame = +1
Query: 742 GPXXCXRPXXPXAXXXXGXXNAPLPSXXASXNXAPXGXXPXXPXXRAXXXLXTPXPXPXQ 921
GP RP A G AP+P P G P + P
Sbjct: 762 GPSPVPRP----APAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRP 817
Query: 922 TPAXPPXXVAPPR 960
P PP +APPR
Sbjct: 818 GPGGPPPNMAPPR 830
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/71 (28%), Positives = 21/71 (29%)
Frame = +2
Query: 746 PPPAXDPXXXAXPXXXAXXTPXFHPXXPXXTXPPXXGXPXPQXXXPXXXX*HLXPPPTKX 925
P PA P P P P PP G P PQ P + PPP
Sbjct: 689 PRPAGLPPGVPPMFNLNAPPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPPMFQ 748
Query: 926 XPXPXXXWPPP 958
PPP
Sbjct: 749 QGFNAGAPPPP 759
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = -2
Query: 976 GGXXXXGGGPLRXGGXXXFGXGXXXVSXGGXXXAXLGXRGTXPGGR 839
GG GGG R G FG G GG G RG GGR
Sbjct: 175 GGFGRGGGGGFRGGDRGGFGGGRGGFR-GGDRGGFRGGRGGDFGGR 219
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.1 bits (62), Expect = 5.1
Identities = 22/86 (25%), Positives = 24/86 (27%), Gaps = 3/86 (3%)
Frame = +2
Query: 734 RXSVPPPAXDPXXXAXPXXXAXX-TPXFHPXXPXXTXPPXXGXPXPQXXXPXXXX*HLXP 910
R + PPP P P + P P PP P P P
Sbjct: 438 RVAPPPPPSAPPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPP 497
Query: 911 PPTKXXPX--PXXXWPPPXXXXXPSP 982
PP P P PPP P P
Sbjct: 498 PPPPLPPIATPSSVPPPPPPPPPPPP 523
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -3
Query: 981 GEGXXXXXGGGHXXXGXGXXLVGGGXRCXXXXXGXXXWGXGXPXXGG 841
G G GGG G G GGG C G G G GG
Sbjct: 143 GGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGGGGGCGGG 189
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -3
Query: 981 GEGXXXXXGGGHXXXGXGXXLVGGGXRCXXXXXGXXXWGXGXPXXGG 841
G G GGG G G GGG C G G G GG
Sbjct: 136 GGGGGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGG 182
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/79 (26%), Positives = 22/79 (27%), Gaps = 1/79 (1%)
Frame = -3
Query: 978 EGXXXXXGGGHXXXGXGXXLVGGGXRCXXXXXGXXXWGXGXPXXGGXVX*GXXGW-KXGV 802
+G GG G G GGG R WG GG GW G
Sbjct: 175 DGGSQGGWGGQNGGGQGGNQGGGGGRGGNQGGEQGGWGGQGGSQGGSQGGSQGGWGNQGG 234
Query: 801 XXAXXXGXAXXXGSXAGGG 745
G G GGG
Sbjct: 235 QQGGGRGGQQGPGGWGGGG 253
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 28.7 bits (61), Expect = 6.7
Identities = 24/97 (24%), Positives = 30/97 (30%), Gaps = 4/97 (4%)
Frame = -1
Query: 977 RGXXXXRGGATXXGGXAGVWXG----XGXGVXRXXXARXXGXXGXXPXGAXXXEAXLDGX 810
R RGG GG G W G G G G G G + G
Sbjct: 172 RSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQ 231
Query: 809 GAFXXPXXKXAXGXXGRXQXXGPRXGHXRPRXXXXXG 699
G + P + G G+ Q G + G P+ G
Sbjct: 232 GGWGGPQQQQGGGGWGQ-QGGGGQGGWGGPQQQQQGG 267
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.7 bits (61), Expect = 6.7
Identities = 24/97 (24%), Positives = 30/97 (30%), Gaps = 4/97 (4%)
Frame = -1
Query: 977 RGXXXXRGGATXXGGXAGVWXG----XGXGVXRXXXARXXGXXGXXPXGAXXXEAXLDGX 810
R RGG GG G W G G G G G G + G
Sbjct: 210 RSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQ 269
Query: 809 GAFXXPXXKXAXGXXGRXQXXGPRXGHXRPRXXXXXG 699
G + P + G G+ Q G + G P+ G
Sbjct: 270 GGWGGPQQQQGGGGWGQ-QGGGGQGGWGGPQQQQQGG 305
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/79 (27%), Positives = 24/79 (30%)
Frame = -3
Query: 981 GEGXXXXXGGGHXXXGXGXXLVGGGXRCXXXXXGXXXWGXGXPXXGGXVX*GXXGWKXGV 802
G G GGG G G GGG G +G G GG G G+
Sbjct: 169 GMGGGGYGGGGDGGYGGGG-FGGGGMGGYGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSG 227
Query: 801 XXAXXXGXAXXXGSXAGGG 745
G G GGG
Sbjct: 228 GYGGGYGPGGGYGMGGGGG 246
Score = 28.3 bits (60), Expect = 8.9
Identities = 22/79 (27%), Positives = 23/79 (29%)
Frame = -3
Query: 981 GEGXXXXXGGGHXXXGXGXXLVGGGXRCXXXXXGXXXWGXGXPXXGGXVX*GXXGWKXGV 802
G G GG+ G G GGG G G G GG G G G
Sbjct: 136 GYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGG 195
Query: 801 XXAXXXGXAXXXGSXAGGG 745
G G GGG
Sbjct: 196 YGGGMGGGGYGGGGMGGGG 214
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = +2
Query: 806 PXFHPXXPXXTXPPXXGXPXPQXXXPXXXX*HLXPPPTKXXPXPXXXWPPPXXXXXPSP 982
P P P PP P P P PPP P P PPP P P
Sbjct: 28 PPCPPPPPPMCAPPPLPCPPPPICPP-----QFCPPPPMCPPPPPPP-PPPMCPPPPPP 80
>AL132949-22|CAB70112.2| 603|Caenorhabditis elegans Hypothetical
protein Y53F4B.25 protein.
Length = 603
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/54 (29%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Frame = +2
Query: 803 TPXFHPXXPXXTXP--PXXGXPXPQXXXPXXXX*HLXPPPTKXXPXPXXXWPPP 958
+P P P P P P P HL PPP P W PP
Sbjct: 223 SPVRFPAQPWQIPPLHPHQSTPNPLTQFFQPIPQHLIPPPNPFFPQQHQTWTPP 276
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 28.3 bits (60), Expect = 8.9
Identities = 28/126 (22%), Positives = 36/126 (28%), Gaps = 3/126 (2%)
Frame = +3
Query: 585 WMPPXXXPSXXXAPVXRGGXP*PXPGGLXX--RPTPXXXXPXXXLRPX-PXVPXPRSXXL 755
++PP P+ P G P P G +P+P P P P P P
Sbjct: 925 FIPPIPVPNPIPKPNPGPGPGPPSPNGPSDPNKPSPNGPSPNGPNGPSDPNKPGPSGPNG 984
Query: 756 RPTXXPXRXLXXRXAERPXSIQXXLXXXRPPGXVPRXPXXAXXXPPXDTXSXPXPNXXXP 935
+P P G P P P T + P PN P
Sbjct: 985 PSDPNKPSPNGPSDPVKPSPSGPSPNGPSPNGPSPNGPSPNGPSPNGPTPNWPSPNGPSP 1044
Query: 936 PXRSGP 953
+GP
Sbjct: 1045 NGPNGP 1050
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,885,584
Number of Sequences: 27780
Number of extensions: 170310
Number of successful extensions: 907
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2573710548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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