Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_H18
(930 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 81 2e-16
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 47 3e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 42 9e-05
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.011
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 34 0.025
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 33 0.043
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 33 0.057
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 32 0.13
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 32 0.13
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 32 0.13
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.31
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 30 0.40
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 30 0.53
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.71
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 29 0.71
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.93
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 1.2
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 27 2.8
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 27 2.8
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 3.8
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 27 5.0
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 26 6.6
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 6.6
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 81.4 bits (192), Expect = 2e-16
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 9/163 (5%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXALXXRXM 601
+ GL W+TT++++RDY G++L V RD+ TG S+G GF+ F + +
Sbjct: 167 IGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHH 226
Query: 600 IDGRWCDVR--IPNGKDGXSTXYRKVFVGRCTENITAEDXREYFGSFGQXTDVFV----- 442
+DG+ D + IP + + K+FVG + T E+ R +F FG+ D +
Sbjct: 227 LDGKIIDPKRAIPREEQEKTA---KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKD 283
Query: 441 -PRPFRAFSFVTFXDPEVARSLCGQDHI-IKGVSVNISTASPK 319
RP R F FVT+ + + Q +I I G V + A+PK
Sbjct: 284 TGRP-RGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 47.6 bits (108), Expect = 2e-06
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = -1
Query: 534 KVFVGRCTENITAEDXREYFGSFGQXTDVFVPRPF-----RAFSFVTFXDPEVARSLCGQ 370
K+F+G T + R+YF FG+ D V R R F F+TF +P+ + +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 369 DHIIKGVSVNISTASPKGERSTTAASGLG 283
+H + G ++ A P+ E+ TA +G
Sbjct: 224 EHHLDGKIIDPKRAIPREEQEKTAKMFVG 252
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 47.2 bits (107), Expect = 3e-06
Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 25/196 (12%)
Frame = -1
Query: 795 CSDFIVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXAL 616
C+ F V L W ++ + G ++ +V D ++G SKG G++ F E A+
Sbjct: 263 CTVF-VGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321
Query: 615 XXRXM--IDGRWCDVRIPNGKDGXSTXYRK----------------VFVGRCTENITAED 490
IDGR ++ + N + Y + VFVG + N T +D
Sbjct: 322 AANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDD 381
Query: 489 XREYFGSFGQXTDVFVPRP-----FRAFSFVTFXDPEVARSLCGQD-HIIKGVSVNISTA 328
FG G + +P + F +VTF D + A+ + H I G + +
Sbjct: 382 LSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFS 441
Query: 327 SPK-GERSTTAASGLG 283
+P+ G S G G
Sbjct: 442 TPRTGGGSRGGRGGFG 457
Score = 31.9 bits (69), Expect = 0.13
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = -1
Query: 792 SDFIVXG-LPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXAL 616
SD + G L + TE+ + GD+ +++ D ++G KG G++ F++ + +
Sbjct: 365 SDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV 424
Query: 615 XXR-XMIDGRWC--DVRIPNGKDGXSTXYRKVFVGR 517
I GR C D P G S R F GR
Sbjct: 425 EMNGHFIAGRPCRLDFSTPR-TGGGSRGGRGGFGGR 459
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 42.3 bits (95), Expect = 9e-05
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 15/162 (9%)
Frame = -1
Query: 750 EAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYE--------VQXXALXXRXMID 595
+A+ D S+ G +L +V D G +KG GF+ F E V L + +
Sbjct: 182 KALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Query: 594 GRWCDVRIPNGK-DGXSTXYRKVFVGRCTENITAEDXREYFGSFGQXTDVFVPRPF---- 430
G R K + + V++ IT ++ + FG FG+ T + + +
Sbjct: 241 GHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKP 300
Query: 429 RAFSFVTFXDPEVARSLCGQ--DHIIKGVSVNISTASPKGER 310
R F FV + + E A+ + D KG + + A K ER
Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHER 342
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 35.5 bits (78), Expect = 0.011
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -1
Query: 783 IVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXALXXRX 604
IV G+ + TEE V D + G + + + D RTG KG I++A E A+ +
Sbjct: 13 IVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKN 72
Query: 603 M 601
+
Sbjct: 73 L 73
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 34.3 bits (75), Expect = 0.025
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -1
Query: 792 SDFIVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXAL 616
+D V G+ + E+ ++ S G + V++ R+ T S+G GF+ F+ E A+
Sbjct: 101 NDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAI 159
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 33.5 bits (73), Expect = 0.043
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXALXXRXM 601
V L T EE +RD G + V + +D TG +KG F+ + + + A+ R
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYD---RDCAIKARDR 262
Query: 600 IDG 592
+DG
Sbjct: 263 LDG 265
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 33.1 bits (72), Expect = 0.057
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = -1
Query: 534 KVFVGRCTENITAEDXREYFGSFGQXTDVFVPRPFRAFSFVTFXDPEVARSLCGQDHIIK 355
++FVGR T ED ++F +GQ D + F FV D AR + +
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDC---KLMNGFGFVEVEDARDARDIVNDFQGKE 61
Query: 354 GVSVNISTASPKGER 310
+ I +GER
Sbjct: 62 FMGSRIVVEPARGER 76
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 31.9 bits (69), Expect = 0.13
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = -1
Query: 792 SDFIVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXAL 616
S V L ++TT+ ++++ +G + V++ TG KG GF+ F + + A+
Sbjct: 228 SILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAM 286
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 31.9 bits (69), Expect = 0.13
Identities = 23/97 (23%), Positives = 42/97 (43%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXALXXRXM 601
V + + T+E V+ GD+ V ++RD + SKG G+I++ AL
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQ-NRSKGFGYIQYRNPISARNALEKMNG 402
Query: 600 IDGRWCDVRIPNGKDGXSTXYRKVFVGRCTENITAED 490
D ++R+ G D +T + R E + ++
Sbjct: 403 FDLAGRNMRVCLGNDKFTTETTSSMLKRFDETLARQE 439
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.9 bits (69), Expect = 0.13
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -1
Query: 792 SDFIVXGLPWKTTEEAVRDYXSSLGDLLMV-QVKRDTRTGLSKGXGFIKFAEYEVQXXAL 616
++ V L E + D S+LG L+ QV RD G SKG GF+ + +E A+
Sbjct: 99 ANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARD-ENGRSKGYGFVSYDSFETADAAI 157
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 30.7 bits (66), Expect = 0.31
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYE 634
V L ++ TE+ + ++ G L ++ +D T S G GFIKF YE
Sbjct: 281 VRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF-RYE 328
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 30.3 bits (65), Expect = 0.40
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLL--MVQVKRDT-RTG--LSKGXGFIKFAEYEVQXXAL 616
V L + T +E + L L +++ K D R G LS G GF++F + A+
Sbjct: 623 VKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVAAM 682
Query: 615 XXRX--MIDGRWCDVRIPN-GKDGXSTXYR---------KVFVGRCTENITAEDXREYFG 472
++DG ++++ + G D + + K+ + T +D + G
Sbjct: 683 HAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKILIKNLPFEATKKDVQSLLG 742
Query: 471 SFGQXTDVFVPRPF----RAFSFVTF 406
++GQ V VP+ F R F+F F
Sbjct: 743 AYGQLRSVRVPKKFDRSARGFAFAEF 768
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.9 bits (64), Expect = 0.53
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAE 640
+ L + E+ + S G+ + + + RD TG SKG F+K+ +
Sbjct: 35 IGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 29.5 bits (63), Expect = 0.71
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 537 RKVFVGRCTENITAEDXREYFGSFGQXTDVFVP 439
R + V T N+T E E FG +G +F+P
Sbjct: 99 RTILVENLTRNVTKEHIAEIFGIYGLIDHIFMP 131
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.5 bits (63), Expect = 0.71
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 759 TTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXA 619
T + + D S G +L + +G+SKG GF+ F + E A
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.1 bits (62), Expect = 0.93
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKF 646
+ LP E+ V + GDLL Q+ ++ G SKG F +F
Sbjct: 314 ISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEF 358
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -1
Query: 531 VFVGRCTENITAEDXREYFGSFGQXTDVFVPRPFRAFSFVTFXDPEVARSLCGQ 370
VFVG ++ ++ E+ + F +FG+ V +P P + FV F + + A Q
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIP-PGKGCGFVQFVNRQSAEIAINQ 357
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 702 QVKRDTRTGLSKGXGFIKFAEYEVQXXAL 616
++ D +T +S+G GF++F + Q AL
Sbjct: 217 KIMTDPQTNVSRGYGFVRFTDENDQKSAL 245
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 531 VFVGRCTENITAEDXREYFGSFGQ 460
V+V + ENIT ++ R YF FG+
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGE 201
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -1
Query: 801 PXCSDFIVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXX 622
P S F+ LP + + S ++ D TGLS+ GF++F+ + Q
Sbjct: 180 PEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQH 239
Query: 621 AL 616
AL
Sbjct: 240 AL 241
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 27.1 bits (57), Expect = 3.8
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Frame = -1
Query: 537 RKVFVGRCTENITAEDXREYFGSFGQXTDVFVPRPF---RAFSFV---TFXDPEVARSLC 376
R+++V + +D +F +GQ V +P+ F + F +V T D E A S
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA 816
Query: 375 GQDHIIKGVSVNISTASPKGERSTTAAS 292
G+ + +N+ + P+ T S
Sbjct: 817 GKQ--LGNRVLNVVLSKPRESLEKTRVS 842
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 407 NVTKLNARKGRGTNTSVX*PKEPKYSLXSSAVIFS 511
N+ +L + +G TSV P P YS S + FS
Sbjct: 5 NLDRLRLKSRQGFETSVSKPSTPSYSTYSLSPTFS 39
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 288 LGWGRMLGWPADAWPL 241
+G+GRMLGW +D W L
Sbjct: 297 IGFGRMLGW-SDEWQL 311
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 534 KVFVGRCTENITAEDXREYFGSFGQXTDV 448
+VFV + +T+E R +F SFG+ D+
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDL 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,171,103
Number of Sequences: 5004
Number of extensions: 56162
Number of successful extensions: 141
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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