Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_H18
(930 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 112 4e-25
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 83 4e-16
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 83 4e-16
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 62 5e-10
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 62 5e-10
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 62 5e-10
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 62 5e-10
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 62 5e-10
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 53 3e-07
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 53 3e-07
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 44 2e-04
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 44 2e-04
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 44 2e-04
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 43 3e-04
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 43 3e-04
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 43 3e-04
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 43 3e-04
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 43 3e-04
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 43 3e-04
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 42 6e-04
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 41 0.001
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 40 0.002
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 40 0.003
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 40 0.003
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 40 0.003
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 40 0.003
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 39 0.006
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 38 0.008
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 38 0.010
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 38 0.010
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 38 0.010
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 38 0.010
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 38 0.014
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 37 0.018
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 37 0.018
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 36 0.031
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 36 0.031
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 36 0.031
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 36 0.041
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 35 0.072
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 35 0.072
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 33 0.38
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 31 0.89
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 31 0.89
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 31 1.2
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 30 2.7
Z83122-7|CAF31483.1| 618|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z83122-6|CAF31482.1| 587|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z83122-5|CAB05600.1| 654|Caenorhabditis elegans Hypothetical pr... 29 3.6
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 29 3.6
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 29 3.6
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 29 4.7
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 29 4.7
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 29 6.3
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 29 6.3
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 28 8.3
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 28 8.3
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 112 bits (269), Expect = 4e-25
Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 10/179 (5%)
Frame = -1
Query: 789 DFIVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXALXX 610
D IV G+ +KTT+E + Y +G ++ ++KR + G SKG GF++ + Q L
Sbjct: 174 DLIVLGVDFKTTDECFQKYFEDIGTVVFCEIKRKS-DGNSKGFGFVRMSSVGEQNKVLAI 232
Query: 609 -RXMIDGRWCDVRIPNGKDGXSTX-YRKVFVGRCTENITAEDXREYFGSFGQX------- 457
+ MIDGR CDV++P+G+D ++FVGR T+ + R+ FG +
Sbjct: 233 PQHMIDGRRCDVKVPDGRDKQGRPSISRIFVGRLTDKVDEHQLRKVFGDEAKSYIETAVV 292
Query: 456 TDVFVPRPFRAFSFVTFXDPEVARSLCGQDHI-IKGVSVNISTASPKGERSTTAASGLG 283
TDVF+P+PFR F+FVT E A + + + + G+SV +S A P+ E + + G
Sbjct: 293 TDVFIPKPFRGFAFVTLSSAEAAERIVSKGSLTVNGLSVGLSIAQPREENNQSVGPDYG 351
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 82.6 bits (195), Expect = 4e-16
Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXALXXR-X 604
+ GL W+TT E +RDY G++ V RD T ++G GFI F + L R
Sbjct: 49 IGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREH 108
Query: 603 MIDGRWCDVRIPNGKDGXS---TXYRKVFVGRCTENITAEDXREYFGSFGQXTDVFV--- 442
+DG+ D ++ K + T +KVF+G + T ED ++YF ++G+ D +
Sbjct: 109 ELDGKKIDPKVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFD 168
Query: 441 --PRPFRAFSFVTFXDPEVARSLCG-QDHIIKGVSVNISTASPK 319
+ R F FVTF EVA +C H I G V A PK
Sbjct: 169 KATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPK 212
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Frame = -1
Query: 534 KVFVGRCTENITAEDXREYFGSFGQXTDVFVPRP-----FRAFSFVTFXDP-EVARSLCG 373
K+F+G + TAE+ R+YFG FG+ + V R R F F+TF DP V + L
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 372 QDHIIKGVSVNISTASPK 319
++H + G ++ A PK
Sbjct: 106 REHELDGKKIDPKVAFPK 123
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 82.6 bits (195), Expect = 4e-16
Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXALXXR-X 604
+ GL W+TT E +RDY G++ V RD T ++G GFI F + L R
Sbjct: 49 IGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREH 108
Query: 603 MIDGRWCDVRIPNGKDGXS---TXYRKVFVGRCTENITAEDXREYFGSFGQXTDVFV--- 442
+DG+ D ++ K + T +KVF+G + T ED ++YF ++G+ D +
Sbjct: 109 ELDGKKIDPKVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFD 168
Query: 441 --PRPFRAFSFVTFXDPEVARSLCG-QDHIIKGVSVNISTASPK 319
+ R F FVTF EVA +C H I G V A PK
Sbjct: 169 KATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPK 212
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Frame = -1
Query: 534 KVFVGRCTENITAEDXREYFGSFGQXTDVFVPRP-----FRAFSFVTFXDP-EVARSLCG 373
K+F+G + TAE+ R+YFG FG+ + V R R F F+TF DP V + L
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 372 QDHIIKGVSVNISTASPK 319
++H + G ++ A PK
Sbjct: 106 REHELDGKKIDPKVAFPK 123
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 62.1 bits (144), Expect = 5e-10
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFA-EYEVQXXALXXRX 604
V GL TT++ +R++ S G++ + V RD T S+G GF+ F+ + EV
Sbjct: 27 VGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPH 86
Query: 603 MIDGRWCDVR--IP---NGKDGXSTXYRKVFVGRCTENITAEDXREYFGSFGQXT----- 454
+IDG+ D + +P + + ++++V E+ T + EYF +G T
Sbjct: 87 IIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEII 146
Query: 453 -DVFVPRPFRAFSFVTFXDPE-VARSLCGQDHIIKGVSVNISTASPKGERS 307
D +P R F FVTF D + V + + + H++ G ++ K E S
Sbjct: 147 LDKATQKP-RGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMS 196
Score = 53.6 bits (123), Expect = 2e-07
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Frame = -1
Query: 537 RKVFVGRCTENITAEDXREYFGSFGQXTDVFVPRP-----FRAFSFVTF-XDPEVARSLC 376
RK+FVG T N T + RE++ FG+ TD+ V R R F FVTF EV ++
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 375 GQDHIIKGVSVNISTASPKGERSTTAAS 292
+ HII G +V+ A P+ +++ + ++
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESN 110
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 62.1 bits (144), Expect = 5e-10
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFA-EYEVQXXALXXRX 604
V GL TT++ +R++ S G++ + V RD T S+G GF+ F+ + EV
Sbjct: 27 VGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPH 86
Query: 603 MIDGRWCDVR--IP---NGKDGXSTXYRKVFVGRCTENITAEDXREYFGSFGQXT----- 454
+IDG+ D + +P + + ++++V E+ T + EYF +G T
Sbjct: 87 IIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEII 146
Query: 453 -DVFVPRPFRAFSFVTFXDPE-VARSLCGQDHIIKGVSVNISTASPKGERS 307
D +P R F FVTF D + V + + + H++ G ++ K E S
Sbjct: 147 LDKATQKP-RGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMS 196
Score = 53.6 bits (123), Expect = 2e-07
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Frame = -1
Query: 537 RKVFVGRCTENITAEDXREYFGSFGQXTDVFVPRP-----FRAFSFVTF-XDPEVARSLC 376
RK+FVG T N T + RE++ FG+ TD+ V R R F FVTF EV ++
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 375 GQDHIIKGVSVNISTASPKGERSTTAAS 292
+ HII G +V+ A P+ +++ + ++
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESN 110
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 62.1 bits (144), Expect = 5e-10
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFA-EYEVQXXALXXRX 604
V GL TT++ +R++ S G++ + V RD T S+G GF+ F+ + EV
Sbjct: 27 VGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPH 86
Query: 603 MIDGRWCDVR--IP---NGKDGXSTXYRKVFVGRCTENITAEDXREYFGSFGQXT----- 454
+IDG+ D + +P + + ++++V E+ T + EYF +G T
Sbjct: 87 IIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEII 146
Query: 453 -DVFVPRPFRAFSFVTFXDPE-VARSLCGQDHIIKGVSVNISTASPKGERS 307
D +P R F FVTF D + V + + + H++ G ++ K E S
Sbjct: 147 LDKATQKP-RGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMS 196
Score = 53.6 bits (123), Expect = 2e-07
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Frame = -1
Query: 537 RKVFVGRCTENITAEDXREYFGSFGQXTDVFVPRP-----FRAFSFVTF-XDPEVARSLC 376
RK+FVG T N T + RE++ FG+ TD+ V R R F FVTF EV ++
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 375 GQDHIIKGVSVNISTASPKGERSTTAAS 292
+ HII G +V+ A P+ +++ + ++
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESN 110
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 62.1 bits (144), Expect = 5e-10
Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 7/176 (3%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXALXXRXM 601
V G+ + E + + + G++ QVK D G S+G F++F E AL R
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQ 92
Query: 600 -IDGRWCDVRIPNGKDGXSTXYRKVFVGRCTENITAEDXREYFGSFGQXTDVFVP----- 439
I G+ +V K S +KVFVG + + +D R +F FG+ D+ P
Sbjct: 93 TIKGKSVEV-----KPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQT 147
Query: 438 RPFRAFSFVTFXDPEVARSLCGQDHIIKGV-SVNISTASPKGERSTTAASGLGWGR 274
+ R F+F+ F + E A Q G ++ A P+G+R A + GR
Sbjct: 148 KARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKAVPQGKRFPGAQGRMPGGR 203
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 62.1 bits (144), Expect = 5e-10
Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 7/176 (3%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXALXXRXM 601
V G+ + E + + + G++ QVK D G S+G F++F E AL R
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQ 92
Query: 600 -IDGRWCDVRIPNGKDGXSTXYRKVFVGRCTENITAEDXREYFGSFGQXTDVFVP----- 439
I G+ +V K S +KVFVG + + +D R +F FG+ D+ P
Sbjct: 93 TIKGKSVEV-----KPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQT 147
Query: 438 RPFRAFSFVTFXDPEVARSLCGQDHIIKGV-SVNISTASPKGERSTTAASGLGWGR 274
+ R F+F+ F + E A Q G ++ A P+G+R A + GR
Sbjct: 148 KARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKAVPQGKRFPGAQGRMPGGR 203
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 53.2 bits (122), Expect = 3e-07
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Frame = -1
Query: 744 VRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFA-EYEVQXXALXXRXMIDGRWCDVR-- 574
+R++ S G++ + V RD T S+G GF+ F+ + EV +IDG+ D +
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 573 IP---NGKDGXSTXYRKVFVGRCTENITAEDXREYFGSFGQXT------DVFVPRPFRAF 421
+P + + ++++V E+ T + EYF +G T D +P R F
Sbjct: 61 VPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP-RGF 119
Query: 420 SFVTFXDPE-VARSLCGQDHIIKGVSVNISTASPKGERS 307
FVTF D + V + + + H++ G ++ K E S
Sbjct: 120 GFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMS 158
Score = 39.9 bits (89), Expect = 0.003
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYE-VQXXALXXRX 604
V G+ TE+ + +Y + G + ++ D T +G GF+ F +++ V L
Sbjct: 80 VSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSH 139
Query: 603 MIDGRWCDVRIPNGKDGXS 547
M++G CDVR KD S
Sbjct: 140 MVNGHRCDVRKGLSKDEMS 158
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 53.2 bits (122), Expect = 3e-07
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Frame = -1
Query: 744 VRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFA-EYEVQXXALXXRXMIDGRWCDVR-- 574
+R++ S G++ + V RD T S+G GF+ F+ + EV +IDG+ D +
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 573 IP---NGKDGXSTXYRKVFVGRCTENITAEDXREYFGSFGQXT------DVFVPRPFRAF 421
+P + + ++++V E+ T + EYF +G T D +P R F
Sbjct: 61 VPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP-RGF 119
Query: 420 SFVTFXDPE-VARSLCGQDHIIKGVSVNISTASPKGERS 307
FVTF D + V + + + H++ G ++ K E S
Sbjct: 120 GFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMS 158
Score = 39.9 bits (89), Expect = 0.003
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYE-VQXXALXXRX 604
V G+ TE+ + +Y + G + ++ D T +G GF+ F +++ V L
Sbjct: 80 VSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSH 139
Query: 603 MIDGRWCDVRIPNGKDGXS 547
M++G CDVR KD S
Sbjct: 140 MVNGHRCDVRKGLSKDEMS 158
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 43.6 bits (98), Expect = 2e-04
Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 19/181 (10%)
Frame = -1
Query: 801 PXCSDFIVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXX 622
P + GL TT+E + +Y S G ++ V RD T S+G GF+ FA
Sbjct: 46 PQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAES 105
Query: 621 ALXXR-XMIDGRWCDVRIPNGKDGXSTXYR------------KVFVGRCTENI-TAEDXR 484
A+ R + G+ D + ++ S+ K+ + T + + + R
Sbjct: 106 AMNDRPHKLGGKTVDSKRAIPREQMSSMIPPPFFETDPAPGCKLLLNGITNGVHSVDSLR 165
Query: 483 EYFGSFGQXTDVFVPRPFRAFSFVTFXDPEVA-RSLCGQD--HII--KGVSVNISTASPK 319
YF +FG V + R FV + D E A R L HI+ + + V + T P
Sbjct: 166 VYFETFGTLDQVEILGQPRGLGFVIYEDKESADRCLAHNSGRHIVNERKIEVRVFTKHPN 225
Query: 318 G 316
G
Sbjct: 226 G 226
Score = 37.1 bits (82), Expect = 0.018
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Frame = -1
Query: 537 RKVFVGRCTENITAEDXREYFGSFGQXTDVFVPRP-----FRAFSFVTFXDPEVARS-LC 376
RK+F+G + + T E YF +G D V R R F FVTF A S +
Sbjct: 49 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 108
Query: 375 GQDHIIKGVSVNISTASPKGERST 304
+ H + G +V+ A P+ + S+
Sbjct: 109 DRPHKLGGKTVDSKRAIPREQMSS 132
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 43.6 bits (98), Expect = 2e-04
Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 19/181 (10%)
Frame = -1
Query: 801 PXCSDFIVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXX 622
P + GL TT+E + +Y S G ++ V RD T S+G GF+ FA
Sbjct: 66 PQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAES 125
Query: 621 ALXXR-XMIDGRWCDVRIPNGKDGXSTXYR------------KVFVGRCTENI-TAEDXR 484
A+ R + G+ D + ++ S+ K+ + T + + + R
Sbjct: 126 AMNDRPHKLGGKTVDSKRAIPREQMSSMIPPPFFETDPAPGCKLLLNGITNGVHSVDSLR 185
Query: 483 EYFGSFGQXTDVFVPRPFRAFSFVTFXDPEVA-RSLCGQD--HII--KGVSVNISTASPK 319
YF +FG V + R FV + D E A R L HI+ + + V + T P
Sbjct: 186 VYFETFGTLDQVEILGQPRGLGFVIYEDKESADRCLAHNSGRHIVNERKIEVRVFTKHPN 245
Query: 318 G 316
G
Sbjct: 246 G 246
Score = 37.1 bits (82), Expect = 0.018
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Frame = -1
Query: 537 RKVFVGRCTENITAEDXREYFGSFGQXTDVFVPRP-----FRAFSFVTFXDPEVARS-LC 376
RK+F+G + + T E YF +G D V R R F FVTF A S +
Sbjct: 69 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 128
Query: 375 GQDHIIKGVSVNISTASPKGERST 304
+ H + G +V+ A P+ + S+
Sbjct: 129 DRPHKLGGKTVDSKRAIPREQMSS 152
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 43.6 bits (98), Expect = 2e-04
Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 19/181 (10%)
Frame = -1
Query: 801 PXCSDFIVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXX 622
P + GL TT+E + +Y S G ++ V RD T S+G GF+ FA
Sbjct: 67 PQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAES 126
Query: 621 ALXXR-XMIDGRWCDVRIPNGKDGXSTXYR------------KVFVGRCTENI-TAEDXR 484
A+ R + G+ D + ++ S+ K+ + T + + + R
Sbjct: 127 AMNDRPHKLGGKTVDSKRAIPREQMSSMIPPPFFETDPAPGCKLLLNGITNGVHSVDSLR 186
Query: 483 EYFGSFGQXTDVFVPRPFRAFSFVTFXDPEVA-RSLCGQD--HII--KGVSVNISTASPK 319
YF +FG V + R FV + D E A R L HI+ + + V + T P
Sbjct: 187 VYFETFGTLDQVEILGQPRGLGFVIYEDKESADRCLAHNSGRHIVNERKIEVRVFTKHPN 246
Query: 318 G 316
G
Sbjct: 247 G 247
Score = 37.1 bits (82), Expect = 0.018
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Frame = -1
Query: 537 RKVFVGRCTENITAEDXREYFGSFGQXTDVFVPRP-----FRAFSFVTFXDPEVARS-LC 376
RK+F+G + + T E YF +G D V R R F FVTF A S +
Sbjct: 70 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 129
Query: 375 GQDHIIKGVSVNISTASPKGERST 304
+ H + G +V+ A P+ + S+
Sbjct: 130 DRPHKLGGKTVDSKRAIPREQMSS 153
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 43.2 bits (97), Expect = 3e-04
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 8/148 (5%)
Frame = -1
Query: 807 PXPXCSDFIVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAE---- 640
P V +P + E R G + + RD T SKG F+ F
Sbjct: 50 PDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
Query: 639 YEVQXXALXXRXMIDGRWCDVRIPNGKDGXSTXYRKVFVGRCTENITAEDXREYFGSFGQ 460
E Q AL +I+G V++ D + RK+F+G+ ++ E+ RE F FG
Sbjct: 110 IEAQG-ALHNIKVIEGMHHPVQMKPA-DTENRNERKLFIGQLSKKHNEENLREIFAKFGH 167
Query: 459 XTDVFVPR----PFRAFSFVTFXDPEVA 388
D V R R +FVTF + A
Sbjct: 168 IEDCSVLRDQDGKSRGCAFVTFTNRSCA 195
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 43.2 bits (97), Expect = 3e-04
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 8/148 (5%)
Frame = -1
Query: 807 PXPXCSDFIVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAE---- 640
P V +P + E R G + + RD T SKG F+ F
Sbjct: 50 PDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
Query: 639 YEVQXXALXXRXMIDGRWCDVRIPNGKDGXSTXYRKVFVGRCTENITAEDXREYFGSFGQ 460
E Q AL +I+G V++ D + RK+F+G+ ++ E+ RE F FG
Sbjct: 110 IEAQG-ALHNIKVIEGMHHPVQMKPA-DTENRNERKLFIGQLSKKHNEENLREIFAKFGH 167
Query: 459 XTDVFVPR----PFRAFSFVTFXDPEVA 388
D V R R +FVTF + A
Sbjct: 168 IEDCSVLRDQDGKSRGCAFVTFTNRSCA 195
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 43.2 bits (97), Expect = 3e-04
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 8/148 (5%)
Frame = -1
Query: 807 PXPXCSDFIVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAE---- 640
P V +P + E R G + + RD T SKG F+ F
Sbjct: 50 PDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
Query: 639 YEVQXXALXXRXMIDGRWCDVRIPNGKDGXSTXYRKVFVGRCTENITAEDXREYFGSFGQ 460
E Q AL +I+G V++ D + RK+F+G+ ++ E+ RE F FG
Sbjct: 110 IEAQG-ALHNIKVIEGMHHPVQMKPA-DTENRNERKLFIGQLSKKHNEENLREIFAKFGH 167
Query: 459 XTDVFVPR----PFRAFSFVTFXDPEVA 388
D V R R +FVTF + A
Sbjct: 168 IEDCSVLRDQDGKSRGCAFVTFTNRSCA 195
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 43.2 bits (97), Expect = 3e-04
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 8/148 (5%)
Frame = -1
Query: 807 PXPXCSDFIVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAE---- 640
P V +P + E R G + + RD T SKG F+ F
Sbjct: 50 PDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
Query: 639 YEVQXXALXXRXMIDGRWCDVRIPNGKDGXSTXYRKVFVGRCTENITAEDXREYFGSFGQ 460
E Q AL +I+G V++ D + RK+F+G+ ++ E+ RE F FG
Sbjct: 110 IEAQG-ALHNIKVIEGMHHPVQMKPA-DTENRNERKLFIGQLSKKHNEENLREIFAKFGH 167
Query: 459 XTDVFVPR----PFRAFSFVTFXDPEVA 388
D V R R +FVTF + A
Sbjct: 168 IEDCSVLRDQDGKSRGCAFVTFTNRSCA 195
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 43.2 bits (97), Expect = 3e-04
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 8/148 (5%)
Frame = -1
Query: 807 PXPXCSDFIVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAE---- 640
P V +P + E R G + + RD T SKG F+ F
Sbjct: 50 PDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
Query: 639 YEVQXXALXXRXMIDGRWCDVRIPNGKDGXSTXYRKVFVGRCTENITAEDXREYFGSFGQ 460
E Q AL +I+G V++ D + RK+F+G+ ++ E+ RE F FG
Sbjct: 110 IEAQG-ALHNIKVIEGMHHPVQMKPA-DTENRNERKLFIGQLSKKHNEENLREIFAKFGH 167
Query: 459 XTDVFVPR----PFRAFSFVTFXDPEVA 388
D V R R +FVTF + A
Sbjct: 168 IEDCSVLRDQDGKSRGCAFVTFTNRSCA 195
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 43.2 bits (97), Expect = 3e-04
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 8/148 (5%)
Frame = -1
Query: 807 PXPXCSDFIVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAE---- 640
P V +P + E R G + + RD T SKG F+ F
Sbjct: 50 PDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
Query: 639 YEVQXXALXXRXMIDGRWCDVRIPNGKDGXSTXYRKVFVGRCTENITAEDXREYFGSFGQ 460
E Q AL +I+G V++ D + RK+F+G+ ++ E+ RE F FG
Sbjct: 110 IEAQG-ALHNIKVIEGMHHPVQMKPA-DTENRNERKLFIGQLSKKHNEENLREIFAKFGH 167
Query: 459 XTDVFVPR----PFRAFSFVTFXDPEVA 388
D V R R +FVTF + A
Sbjct: 168 IEDCSVLRDQDGKSRGCAFVTFTNRSCA 195
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 41.9 bits (94), Expect = 6e-04
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAE 640
V P++TTEE + ++ SS+G + V++ D TG +G FI+FAE
Sbjct: 9 VGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAE 55
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 40.7 bits (91), Expect = 0.001
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 4/128 (3%)
Frame = -1
Query: 807 PXPXCSDFIVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAE---- 640
P V +P + E R G + + RD T SKG F+ F
Sbjct: 50 PDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
Query: 639 YEVQXXALXXRXMIDGRWCDVRIPNGKDGXSTXYRKVFVGRCTENITAEDXREYFGSFGQ 460
E Q AL +I+G V++ D + RK+F+G+ ++ E+ RE F FG
Sbjct: 110 IEAQG-ALHNIKVIEGMHHPVQMKPA-DTENRNERKLFIGQLSKKHNEENLREIFAKFGH 167
Query: 459 XTDVFVPR 436
D V R
Sbjct: 168 IEDCSVLR 175
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 40.3 bits (90), Expect = 0.002
Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 19/167 (11%)
Frame = -1
Query: 750 EAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKF--------AEYEVQXXALXXRXMID 595
++V D S G++L +V D G SKG GF+ F A +V L + +
Sbjct: 159 KSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
Query: 594 GRWCDVRIPNGKD-GXS-TXYRKVFVGRCTENITAEDXREYFGSFGQXTDVFV-----PR 436
G++ R K+ G S Y VFV E++ E F FG+ T V +
Sbjct: 218 GKF-QPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGK 276
Query: 435 PFRAFSFVTFXDPEVARSLCGQ--DHIIKGVSVNIST--ASPKGERS 307
P + F FV F D + A + D I++G +S A K ERS
Sbjct: 277 P-KGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERS 322
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 40.3 bits (90), Expect = 0.002
Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 19/167 (11%)
Frame = -1
Query: 750 EAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKF--------AEYEVQXXALXXRXMID 595
++V D S G++L +V D G SKG GF+ F A +V L + +
Sbjct: 159 KSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
Query: 594 GRWCDVRIPNGKD-GXS-TXYRKVFVGRCTENITAEDXREYFGSFGQXTDVFV-----PR 436
G++ R K+ G S Y VFV E++ E F FG+ T V +
Sbjct: 218 GKF-QPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGK 276
Query: 435 PFRAFSFVTFXDPEVARSLCGQ--DHIIKGVSVNIST--ASPKGERS 307
P + F FV F D + A + D I++G +S A K ERS
Sbjct: 277 P-KGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERS 322
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 39.5 bits (88), Expect = 0.003
Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 24/192 (12%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXAL----- 616
V L + + +R+ GD+ +V RDT T SKG GF+ + + E A+
Sbjct: 26 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG 85
Query: 615 --XXRXMIDGRWCDVRIPNGKDGXSTXYRK---------------VFVGRCTENITAEDX 487
R I W R P ++ S K V+VG ++T ++
Sbjct: 86 QWLGRRTIRTNWA-TRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEI 143
Query: 486 REYFGSFGQXTDVFVPRPFRAFSFVTFXDPEVARSLCGQ--DHIIKGVSVNISTASPKGE 313
R+ F SFG+ T+V + + + ++FV F + + A Q + + G V S G+
Sbjct: 144 RQGFASFGRITEVRIFK-MQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGK-TGD 201
Query: 312 RSTTAASGLGWG 277
T G+G
Sbjct: 202 TGKTPGGSYGYG 213
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 39.5 bits (88), Expect = 0.003
Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 24/192 (12%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXAL----- 616
V L + + +R+ GD+ +V RDT T SKG GF+ + + E A+
Sbjct: 36 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG 95
Query: 615 --XXRXMIDGRWCDVRIPNGKDGXSTXYRK---------------VFVGRCTENITAEDX 487
R I W R P ++ S K V+VG ++T ++
Sbjct: 96 QWLGRRTIRTNWA-TRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEI 153
Query: 486 REYFGSFGQXTDVFVPRPFRAFSFVTFXDPEVARSLCGQ--DHIIKGVSVNISTASPKGE 313
R+ F SFG+ T+V + + + ++FV F + + A Q + + G V S G+
Sbjct: 154 RQGFASFGRITEVRIFK-MQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGK-TGD 211
Query: 312 RSTTAASGLGWG 277
T G+G
Sbjct: 212 TGKTPGGSYGYG 223
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 39.5 bits (88), Expect = 0.003
Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 24/192 (12%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXAL----- 616
V L + + +R+ GD+ +V RDT T SKG GF+ + + E A+
Sbjct: 139 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG 198
Query: 615 --XXRXMIDGRWCDVRIPNGKDGXSTXYRK---------------VFVGRCTENITAEDX 487
R I W R P ++ S K V+VG ++T ++
Sbjct: 199 QWLGRRTIRTNWA-TRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEI 256
Query: 486 REYFGSFGQXTDVFVPRPFRAFSFVTFXDPEVARSLCGQ--DHIIKGVSVNISTASPKGE 313
R+ F SFG+ T+V + + + ++FV F + + A Q + + G V S G+
Sbjct: 257 RQGFASFGRITEVRIFK-MQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGK-TGD 314
Query: 312 RSTTAASGLGWG 277
T G+G
Sbjct: 315 TGKTPGGSYGYG 326
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 39.5 bits (88), Expect = 0.003
Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 24/192 (12%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXAL----- 616
V L + + +R+ GD+ +V RDT T SKG GF+ + + E A+
Sbjct: 107 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG 166
Query: 615 --XXRXMIDGRWCDVRIPNGKDGXSTXYRK---------------VFVGRCTENITAEDX 487
R I W R P ++ S K V+VG ++T ++
Sbjct: 167 QWLGRRTIRTNWA-TRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEI 224
Query: 486 REYFGSFGQXTDVFVPRPFRAFSFVTFXDPEVARSLCGQ--DHIIKGVSVNISTASPKGE 313
R+ F SFG+ T+V + + + ++FV F + + A Q + + G V S G+
Sbjct: 225 RQGFASFGRITEVRIFK-MQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGK-TGD 282
Query: 312 RSTTAASGLGWG 277
T G+G
Sbjct: 283 TGKTPGGSYGYG 294
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 38.7 bits (86), Expect = 0.006
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAE-YEVQXXALXXRX 604
V GLP+ T+++ + +Y GD+ V D T S+G GF+ + +
Sbjct: 39 VGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNP 98
Query: 603 MIDGRWCDVRI 571
+IDGR +V +
Sbjct: 99 IIDGRKANVNL 109
Score = 34.3 bits (75), Expect = 0.13
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Frame = -1
Query: 546 TXYRKVFVGRCTENITAEDXREYFGSFGQXTDVFV-----PRPFRAFSFVTFXDPEVARS 382
T + K+FVG + + + EYF FG + V + R + FVT D A
Sbjct: 32 TMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAER 91
Query: 381 LCGQDH-IIKGVSVNISTA 328
C + II G N++ A
Sbjct: 92 ACKDPNPIIDGRKANVNLA 110
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 38.3 bits (85), Expect = 0.008
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = -1
Query: 792 SDFIVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYE 634
++ I+ LP T+E VR +S+G++ ++ RD TG S G GF+ + E
Sbjct: 42 TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREE 94
Score = 35.9 bits (79), Expect = 0.041
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 792 SDFIVXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKF 646
S+ V G+P T + G ++ ++ D TGLSKG GF++F
Sbjct: 128 SNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRF 176
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 37.9 bits (84), Expect = 0.010
Identities = 15/47 (31%), Positives = 30/47 (63%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAE 640
V +P++ TEE + +Y +++G + V++ D TG +G F++F+E
Sbjct: 10 VGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSE 56
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 37.9 bits (84), Expect = 0.010
Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 16/163 (9%)
Frame = -1
Query: 750 EAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKF--------AEYEVQXXALXXRXMID 595
+++ D S G++L +V D G SKG GF+ F A +V L + +
Sbjct: 134 KSIYDTFSLFGNILSCKVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
Query: 594 GRWCDVRIPNGKDGXST-XYRKVFVGRCTENITAEDXREYFGSFGQXTD---VFVPRPFR 427
G++ N + G + + V+V ++ E + F FG T + V +
Sbjct: 193 GKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSK 252
Query: 426 AFSFVTFXDPEVARSLCG--QDHIIKG--VSVNISTASPKGER 310
F FV F +PE A + D I+G + +++ A K ER
Sbjct: 253 GFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSER 295
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 37.9 bits (84), Expect = 0.010
Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 16/163 (9%)
Frame = -1
Query: 750 EAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKF--------AEYEVQXXALXXRXMID 595
+++ D S G++L +V D G SKG GF+ F A +V L + +
Sbjct: 71 KSIYDTFSLFGNILSCKVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 129
Query: 594 GRWCDVRIPNGKDGXST-XYRKVFVGRCTENITAEDXREYFGSFGQXTD---VFVPRPFR 427
G++ N + G + + V+V ++ E + F FG T + V +
Sbjct: 130 GKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSK 189
Query: 426 AFSFVTFXDPEVARSLCG--QDHIIKG--VSVNISTASPKGER 310
F FV F +PE A + D I+G + +++ A K ER
Sbjct: 190 GFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSER 232
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 37.9 bits (84), Expect = 0.010
Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 16/163 (9%)
Frame = -1
Query: 750 EAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKF--------AEYEVQXXALXXRXMID 595
+++ D S G++L +V D G SKG GF+ F A +V L + +
Sbjct: 134 KSIYDTFSLFGNILSCKVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
Query: 594 GRWCDVRIPNGKDGXST-XYRKVFVGRCTENITAEDXREYFGSFGQXTD---VFVPRPFR 427
G++ N + G + + V+V ++ E + F FG T + V +
Sbjct: 193 GKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSK 252
Query: 426 AFSFVTFXDPEVARSLCG--QDHIIKG--VSVNISTASPKGER 310
F FV F +PE A + D I+G + +++ A K ER
Sbjct: 253 GFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSER 295
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 37.5 bits (83), Expect = 0.014
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKF 646
V LP + E+ +RD +G ++ + + RD TGL KG F+ F
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTF 224
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 37.1 bits (82), Expect = 0.018
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Frame = -1
Query: 534 KVFVGRCTENITAEDXREYFGSFGQXTDVFVPRPFRAFSFVTFXD----PEVARSLCGQD 367
KV+VG + T+++ E F FG+ V+V R F+FV + D + R+L G
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 366 HIIKGVSVNISTASPKGERSTTAASG--LGWGRMLGWPADAWPLPAPH 229
V +ST +G G G GR G + A P P+
Sbjct: 64 ICGVRARVELSTGQRRGGGGRGGGFGGRGGGGRDSGLRSSASPSAIPN 111
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 37.1 bits (82), Expect = 0.018
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Frame = -1
Query: 534 KVFVGRCTENITAEDXREYFGSFGQXTDVFVPRPFRAFSFVTFXD----PEVARSLCGQD 367
KV+VG + T+++ E F FG+ V+V R F+FV + D + R+L G
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 366 HIIKGVSVNISTASPKGERSTTAASGLGWGRMLGWPADAWP 244
I GV + ++ G+R G G+G G D P
Sbjct: 64 --ICGVRARVELST--GQRRGGGGRGGGFGGRGGGGRDRSP 100
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 36.3 bits (80), Expect = 0.031
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = -1
Query: 534 KVFVGRCTENITAEDXREYFGSFGQXTDVFVPRPFRAFSFVTFXDPEVA-RSLCGQDHII 358
++++GR T ++ +D +F +GQ DV + F F D E A L G++ +
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKE--L 61
Query: 357 KGVSVNISTASPKGERSTTAASGLGWGR 274
G V + + P+G G G GR
Sbjct: 62 GGERVILDYSKPRGGGGDRGGFG-GGGR 88
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 36.3 bits (80), Expect = 0.031
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = -1
Query: 534 KVFVGRCTENITAEDXREYFGSFGQXTDVFVPRPFRAFSFVTFXDPEVA-RSLCGQDHII 358
++++GR T ++ +D +F +GQ DV + F F D E A L G++ +
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKE--L 61
Query: 357 KGVSVNISTASPKGERSTTAASGLGWGR 274
G V + + P+G G G GR
Sbjct: 62 GGERVILDYSKPRGGGGDRGGFG-GGGR 88
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 36.3 bits (80), Expect = 0.031
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = -1
Query: 534 KVFVGRCTENITAEDXREYFGSFGQXTDVFVPRPFRAFSFVTFXDPEVA-RSLCGQDHII 358
++++GR T ++ +D +F +GQ DV + F F D E A L G++ +
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKE--L 61
Query: 357 KGVSVNISTASPKGERSTTAASGLGWGR 274
G V + + P+G G G GR
Sbjct: 62 GGERVILDYSKPRGGGGDRGGFG-GGGR 88
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 35.9 bits (79), Expect = 0.041
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = -1
Query: 534 KVFVGRCTENITAEDXREYFGSFGQXTDVFVPRPFRAFSFVTFXD----PEVARSLCGQD 367
KV+VG + T+++ E F FG+ V+V R F+FV + D + R+L G
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 366 HIIKGVSVNISTASPKGERSTTAASGLGWG 277
I GV + ++ G+R G G+G
Sbjct: 64 --ICGVRARVELST--GQRRGGGGRGGGFG 89
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 35.1 bits (77), Expect = 0.072
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXALXXR-- 607
+ L ++TT +R GD+ V + RD + SKG GF++F E AL
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82
Query: 606 XMIDGR 589
++DGR
Sbjct: 83 KLVDGR 88
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 35.1 bits (77), Expect = 0.072
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXALXXR-- 607
+ L ++TT +R GD+ V + RD + SKG GF++F E AL
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82
Query: 606 XMIDGR 589
++DGR
Sbjct: 83 KLVDGR 88
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 32.7 bits (71), Expect = 0.38
Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 20/151 (13%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXALXXRXM 601
V L + E ++ + G++ +V RD +T SKG GF+ F + A+
Sbjct: 139 VGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAG--- 195
Query: 600 IDGRWCDVRI--------PNGKD------------GXSTXYRKVFVGRCTENITAEDXRE 481
++G+W R N ++ V+VG ++ T D R+
Sbjct: 196 MNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRD 255
Query: 480 YFGSFGQXTDVFVPRPFRAFSFVTFXDPEVA 388
F ++G +V + + R ++FV + E A
Sbjct: 256 LFSTYGDIAEVRIFKTQR-YAFVRYEKKECA 285
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 31.5 bits (68), Expect = 0.89
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -1
Query: 774 GLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXAL-XXRXMI 598
GLPW+ TE+ +RD+ + G + +++ R R G + G + F E AL R +
Sbjct: 11 GLPWEATEQELRDFFGNNG-IESLEIPR--RNGRTSGDAKVVFTNEEDYNNALKKDREHL 67
Query: 597 DGRWCDV 577
R+ +V
Sbjct: 68 GSRYIEV 74
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 31.5 bits (68), Expect = 0.89
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -1
Query: 774 GLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXAL-XXRXMI 598
GLPW+ TE+ +RD+ + G + +++ R R G + G + F E AL R +
Sbjct: 11 GLPWEATEQELRDFFGNNG-IESLEIPR--RNGRTSGDAKVVFTNEEDYNNALKKDREHL 67
Query: 597 DGRWCDV 577
R+ +V
Sbjct: 68 GSRYIEV 74
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 762 KTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXA 619
+ TE+ V D S G + + + D RTG KG + EYE Q A
Sbjct: 65 EATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALV---EYETQKEA 109
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 771 LPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKF 646
LP+ T E+ ++ G++ VQV D +TG KG ++F
Sbjct: 286 LPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEF 327
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKF 646
V L TTE+ +RD G++ + D +G S+G GFI F
Sbjct: 80 VFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYF 124
Score = 28.7 bits (61), Expect = 6.3
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Frame = -1
Query: 501 TAEDXREYFGSFGQXT--DVFVPRP---FRAFSFVTF---XDPEVAR-SLCGQDHIIKGV 349
T +D R+ FG FG+ D+ RP R F F+ F D AR LC D + G
Sbjct: 88 TEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAARDKLCNTD--LDGH 145
Query: 348 SVNISTASPKGERSTTAASGLG 283
+ + + K S T +G
Sbjct: 146 KIRVDFSLTKRGHSPTPGQYMG 167
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 29.9 bits (64), Expect = 2.7
Identities = 29/95 (30%), Positives = 39/95 (41%)
Frame = -1
Query: 918 GERGITGVRFLRGAXYHRXGXARPTDIGXXPTXGFPPPXPXCSDFIVXGLPWKTTEEAVR 739
G RG +G R L+ HR G R G G P IV GLP + + ++
Sbjct: 85 GPRGPSG-RPLQDGGDHRGGDFRG---GRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLK 140
Query: 738 DYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYE 634
D+ GD+ V RD G G ++F YE
Sbjct: 141 DHMRDAGDVCYADVARD-------GTGVVEFTRYE 168
>Z83122-7|CAF31483.1| 618|Caenorhabditis elegans Hypothetical
protein R11A5.4d protein.
Length = 618
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -1
Query: 393 VARSLCGQDHIIKGVSVNISTASPKGERSTTAASGLGWGRMLGWPADAW 247
+ R L G+ I GV I T KG + + W ++ PAD W
Sbjct: 535 IIRRLDGEQEI--GVETPIGTVPAKGSINLEGLGEVNWDELMSVPADYW 581
>Z83122-6|CAF31482.1| 587|Caenorhabditis elegans Hypothetical
protein R11A5.4c protein.
Length = 587
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -1
Query: 393 VARSLCGQDHIIKGVSVNISTASPKGERSTTAASGLGWGRMLGWPADAW 247
+ R L G+ I GV I T KG + + W ++ PAD W
Sbjct: 504 IIRRLDGEQEI--GVETPIGTVPAKGSINLEGLGEVNWDELMSVPADYW 550
>Z83122-5|CAB05600.1| 654|Caenorhabditis elegans Hypothetical
protein R11A5.4a protein.
Length = 654
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -1
Query: 393 VARSLCGQDHIIKGVSVNISTASPKGERSTTAASGLGWGRMLGWPADAW 247
+ R L G+ I GV I T KG + + W ++ PAD W
Sbjct: 571 IIRRLDGEQEI--GVETPIGTVPAKGSINLEGLGEVNWDELMSVPADYW 617
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = -1
Query: 759 TTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYE 634
T + ++ S++G + V++ D+RTG SKG +++F + E
Sbjct: 36 TRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEE 77
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = -1
Query: 759 TTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYE 634
T + ++ S++G + V++ D+RTG SKG +++F + E
Sbjct: 181 TRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEE 222
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -1
Query: 765 WKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYEVQXXALXXR-XMIDGR 589
W T + + Y G + V + D TGL +G I F + A+ R +IDG
Sbjct: 34 WVTGKSQLEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIEQRPHVIDGD 93
Query: 588 WCDV 577
DV
Sbjct: 94 RVDV 97
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 29.1 bits (62), Expect = 4.7
Identities = 29/95 (30%), Positives = 38/95 (40%)
Frame = -1
Query: 918 GERGITGVRFLRGAXYHRXGXARPTDIGXXPTXGFPPPXPXCSDFIVXGLPWKTTEEAVR 739
G RG G R L+ HR G R G G P IV GLP + + ++
Sbjct: 85 GPRG-PGGRPLQDGGDHRGGDFRG---GRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLK 140
Query: 738 DYXSSLGDLLMVQVKRDTRTGLSKGXGFIKFAEYE 634
D+ GD+ V RD G G ++F YE
Sbjct: 141 DHMRDAGDVCYADVARD-------GTGVVEFTRYE 168
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -1
Query: 780 VXGLPWKTTEEAVRDYXSSLGDLLMVQVKRDTRTGLSKGXGFIKF 646
V G TE+ + GD++ + + D +G +G GF++F
Sbjct: 15 VGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEF 59
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Frame = -1
Query: 540 YRKVFVGRCTENITAEDXREYFGSFGQXTD---VFVPRPFRAFSFVTFXDPEVARSLCG- 373
+ V+V ++ E + F FG T + V + F FV F +PE A +
Sbjct: 152 FTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQA 211
Query: 372 -QDHIIKG--VSVNISTASPKGER 310
D I+G + +++ A K ER
Sbjct: 212 LHDSTIEGTDLKLHVCRAQKKSER 235
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Frame = -1
Query: 537 RKVFVGRCTENITAEDXREYF---GSFGQXT---DVFVPRPFRAFSFVTFXDPE-VARSL 379
+ V+VG TAE+ ++F GS + T D F P + F++V F + E + +L
Sbjct: 78 KSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHP-KGFAYVEFTEKEGMQNAL 136
Query: 378 CGQDHIIKGVSVNI 337
D +++G + +
Sbjct: 137 AMTDSLLRGRQIKV 150
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -1
Query: 570 PNGKDGXSTXYRKVFVGRCTENITAEDXREYFGSFGQXTDVFVPR 436
P ++ + + VF+G N T E+ E+F GQ +P+
Sbjct: 44 PTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPK 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,052,803
Number of Sequences: 27780
Number of extensions: 343435
Number of successful extensions: 730
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -