Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_H17
(909 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 250 2e-67
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.6
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo... 27 3.7
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 27 4.9
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 27 4.9
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 4.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 4.9
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 26 8.5
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 8.5
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 8.5
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 250 bits (612), Expect = 2e-67
Identities = 114/173 (65%), Positives = 139/173 (80%)
Frame = +2
Query: 161 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 340
M LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A
Sbjct: 1 MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60
Query: 341 EFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG 520
+F + +V+ STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G
Sbjct: 61 KFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAG 120
Query: 521 IPFRGLFIIDDKQNLRQITINDLPVGRSVXETCGWVQAFQFTDKHGXVCPAXW 679
+ FRGLF+ID K LRQITINDLPVGRSV E + AFQF ++HG VCPA W
Sbjct: 121 VAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANW 173
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -3
Query: 280 IEEQHNIFPLVVRQRNVLELSVDDGRGLELGSGFGHLQRHLVET*RLLNNRPKTEST 110
+EEQ + L+ ++ + L D R +E F HL+ LVE LL++R T ST
Sbjct: 12 VEEQPILEKLIGIRQRLAVLKRDRTRFIEKNEVF-HLKDELVEQMNLLDSRRSTNST 67
>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 400
Score = 27.1 bits (57), Expect = 3.7
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Frame = +2
Query: 20 LTIVEFLKILMNRGFXDPDCHFYFKSESFSGAFGFRSIIQKSLG---------FNKMPLQ 172
L + E + + R + F + FG SIIQ+ + K+ LQ
Sbjct: 143 LELPELMNACIERNYFSETLEFQALAYRLKDRFGTNSIIQELITQVETLVVKLTEKLILQ 202
Query: 173 MTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFF 277
+ KP + VV LS+ + KYV L+F
Sbjct: 203 LQKPLKLYSLIKVVTYLRVTAKLSEAQLKYVFLYF 237
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +2
Query: 140 KSLGFNKMPLQMTKPAPQ 193
KSLG++++P+++ PAPQ
Sbjct: 107 KSLGYDQIPVRVLAPAPQ 124
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 182 PAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 313
P P F+ + +G+F S + K K V L YP TF TE
Sbjct: 271 PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 613 LXHRPPHGQVVDGDL-PEVLLVVDDEESSEGDARLLVQ 503
L + ++ D DL PEV ++ +EES G++R L++
Sbjct: 121 LAEKDEENEIADNDLEPEVYDILYEEESKLGESRDLIR 158
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = -1
Query: 372 PSTSQPILRNSSAFSENAMISVGHTNVKSKG*KNSTTYFPL*SDREMSLNSPLTTAVALN 193
P TS +L +S+ + + +++ T + S N T P+ S ++ ++P+T++ ALN
Sbjct: 1247 PITSSSVLNSSTPITSSTVVN-SSTPITSSTALN--TSIPITSSSVLNSSTPITSSTALN 1303
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 8.5
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Frame = +2
Query: 164 PLQMTKPAPQ--FKATAVVNGEFKDISLSDYKG-----------KYVVLFFYPLDFTFVC 304
P+ + KPA +T V DI+L D G K +V+F YP T C
Sbjct: 30 PVMLKKPAKDESVDSTIQVGDVIPDITLPDEDGTSIRLRDITANKGLVIFAYPKASTPGC 89
Query: 305 PTEIIAFSEKADEFRKIGCEVLGASTDS 388
+ F + + + EVLG S D+
Sbjct: 90 TKQGCGFRDNYPKIQASDYEVLGLSFDT 117
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 8.5
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +2
Query: 92 KSESFSGAFGFRSIIQKSLGFNKMPLQMTKPAPQFKATAVVNGEFKDISLS-DYKGKYVV 268
+ ESF AFG S + S+G ++T ++ +VNG +++ + + +
Sbjct: 250 REESFKRAFGHASSSESSIG------EITDSREDIQSNRLVNGSWENNDFTKEINNNFPD 303
Query: 269 LFFYPLDFTFVCPTEIIAFSEKADEFR 349
P T PT+++ ++ + FR
Sbjct: 304 RSETPTLQTIEAPTKLMKYTRRKSLFR 330
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 8.5
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -1
Query: 642 NWNACTQPQ-VSSTDLPTGRSLMVICLRFCLSSMMKSPRKGMPVSSSS 502
N+NA QP V S LP S + L S SPR G P S S
Sbjct: 315 NYNAPFQPAGVGSVPLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPS 362
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,322
Number of Sequences: 5004
Number of extensions: 53769
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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