Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_H16
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        30   0.53 
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    28   1.6  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   3.7  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.7  
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc...    27   4.9  
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    26   8.6  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    26   8.6  

>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +2

Query: 326 PSMWNQRSLKTFLQ--RRNSKLLLKRLCQQRVTMKATEKRPSLNWRSLSQLRLAKTSGPL 499
           P  W  + + + L   R+NS++     C Q+ T++  +K    NW  ++ L    T   +
Sbjct: 274 PPSWKTQQMMSHLNLSRKNSEVSKTCKCLQKETIRCNKKSNCYNWNGIAALETYTTECHI 333

Query: 500 VIGKKK 517
            I  K+
Sbjct: 334 QIPDKE 339


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 581  SIRCRLLGCTSTPVXEPASDTKLDQCRLWMHPHCQ*SQDTC 703
            ++RCR  G    P   P S   L+ C L   PH    +DTC
Sbjct: 1308 NVRCRCCGIKHLPAHCPLSIVPLEICFLCGTPHFS-GRDTC 1347


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 732 DRTWIARRLTFEPHNSTLNENTNYFWTDSRPE 827
           D  W      F PH   + EN NY+  D R E
Sbjct: 200 DNVWNLEHSVFAPHGDNVIENLNYY-NDLRKE 230


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 732 DRTWIARRLTFEPHNSTLNENTNYFWTDSRPE 827
           D  W      F PH   + EN NY+  D R E
Sbjct: 200 DNVWNLEHSVFAPHGDNVIENLNYY-NDLRKE 230


>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
           Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 606 HPNNRHLMERWLRHFVNGGHI 544
           HP+N HL++R+L H     H+
Sbjct: 83  HPSNVHLVDRYLIHRTENQHV 103


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 308 SRGHPLPSMWNQRSLKTFLQRRNSKLLLKR 397
           +R H L S  NQ+    FL+  NSKL+ +R
Sbjct: 33  ARIHQLISQRNQKFQANFLEWENSKLVYRR 62


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 381 FEFLRWRKVFNERWFHIDGSGCPRE 307
           F+ +  R  F  RWF ++G G PRE
Sbjct: 14  FDVIVARSAFG-RWFRLEGCGHPRE 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,669,255
Number of Sequences: 5004
Number of extensions: 78879
Number of successful extensions: 216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)