Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_H16
         (915 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    26   0.55 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   2.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.9  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          23   3.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   8.9  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.8 bits (54), Expect = 0.55
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 691 PRYLFGGKALTLQSIGRGLLADL--HLNPTTRRSMKTPITSGPTQDQKDSYL 840
           PRY   G  +TL +    L   L  H++PTT   +K PI+    + ++  +L
Sbjct: 602 PRYCLFGHNVTLANKFESLSEPLRIHVSPTTYILLKYPISGFDLEPRQKEFL 653


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 598 IGVYIDPRVRTGFRYKVRPMQALDAPPLSVKPRYLFGGKALTLQSIG 738
           +G   DP      R KV  ++ L     SV+P+ + G    ++  +G
Sbjct: 551 MGPSYDPMAVVSPRLKVHGIRGLRVADASVQPQVISGNPVASVNMVG 597


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
 Frame = +3

Query: 663 FGCTPTVSEAKILVRR*SLDSAVDRT----------WIARRLTFEPHNSTL 785
           FG  P   E  I+VR     S VD T          W+ RRL F+    TL
Sbjct: 25  FGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSWVDRRLAFQGGKETL 75


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 363 RKVFNERWFHIDGSGCPRESGTGK 292
           R+   E W H+D S  P +S + +
Sbjct: 61  RRKLEENWIHVDISFLPEKSTSSR 84


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +1

Query: 286 WNLTRARLAGTSTAIDVEPAFVENFPPAQEFEVTPKALVSATSDYESDGEEAFPELEV-P 462
           W LT  +L  TS+   VEP     +       V     +S+  +YE    + FP  E  P
Sbjct: 76  WLLTEEKLPKTSSNASVEPDSKVTYSGLWRVCVA----ISSRMEYECSRIDYFPNEEYSP 131

Query: 463 EP 468
           +P
Sbjct: 132 DP 133


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 726 AVDRTWIARRLTFEPHNSTLNENTNYFWT 812
           A ++ ++AR L   P N++    T+Y  T
Sbjct: 148 ATEKMFVARHLAETPKNTSAVRYTHYIGT 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,367
Number of Sequences: 438
Number of extensions: 5370
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)