Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_H15
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   363   e-101
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    27   2.8  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    27   3.7  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   6.5  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    26   6.5  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   8.5  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   8.5  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  363 bits (892), Expect = e-101
 Identities = 167/224 (74%), Positives = 195/224 (87%), Gaps = 1/224 (0%)
 Frame = +3

Query: 207 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 386
           YK+AD  LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6   YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65

Query: 387 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPDGKP 563
           L+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L  FP GKP
Sbjct: 66  LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKP 125

Query: 564 LNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKVPAINVNDSV 743
           LNMILDDGGDLT LVH ++P+LL D++GI+EETTTGVHNLYKMF+E  LKVPAINVNDSV
Sbjct: 126 LNMILDDGGDLTALVHERHPELLVDIRGISEETTTGVHNLYKMFKENKLKVPAINVNDSV 185

Query: 744 TKSKFDNLYGCRESLLDGIKRATDIMIAGKVGVXAGYGDVXKXC 875
           TKSKFDNL+GC+ESL+DGIKRATD+MIAGKV V AG+GDV K C
Sbjct: 186 TKSKFDNLFGCKESLVDGIKRATDVMIAGKVAVVAGFGDVGKGC 229


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +3

Query: 105 PIYFRYFNKNNLKRKQQVNLP*VYQTLYYKMKPPYKIADEKL--AEWGRKEIMLAEKEMP 278
           P YF +  KN     +   LP  YQ +  +  PPY     KL     G KE  +A  + P
Sbjct: 8   PYYFTH-EKNLNNASKYSELPIAYQEIPLQSLPPYPKVASKLKGVVAGGKENNIASFQKP 66

Query: 279 GLMACRRKYAPA 314
              A  R Y P+
Sbjct: 67  SSKA-TRPYIPS 77


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -3

Query: 338 YSGTFEYFSWSIFPTTCHKAWHFFLC*HNFFSAPFSQFLVSDFVRRLHFVVQSLIY 171
           Y   +  ++W  F  T +K  H+FL  H +   P + F+         F V S+++
Sbjct: 356 YDDWWNCWTWDQFARTWNKPVHYFLLRHVY--VPLNSFMSKSLSTFFTFFVSSVLH 409


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 697 RNILYKLCTPVVVSSVIPFTSFKRSGYLVWTKFVKSPPSSKIILRGF 557
           RN+L++ CT   +     +  F++ G L + K VK P + + + RGF
Sbjct: 282 RNLLFE-CTEQEL-----YNHFRQFGPLAYAKLVKDPATDRSLGRGF 322


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 735 DSVTKSKFDNLYGCRESLLDGIKRATDIMIAGKVGVXAGYGDVXKXC 875
           +S T +K D          +  +R+TD+++  K G+  G+    K C
Sbjct: 18  ESSTLNKKDTAINELNPEQNDTRRSTDLLLEDKYGIQTGFSKYWKKC 64


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 69  SCARERVLQYQVPIYFRYFNKNNLKRKQQVNL 164
           S  +  +L+  V  YFRY  + +LK +Q++ L
Sbjct: 665 SVIQNELLRRSVDTYFRYIFQTDLKLEQRIKL 696


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +2

Query: 248 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 427
           R+Y    R ++PY  S    SS        S  ++  STNS      N   SR T + + 
Sbjct: 90  RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149

Query: 428 H 430
           H
Sbjct: 150 H 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,621,551
Number of Sequences: 5004
Number of extensions: 77447
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)