Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_H14
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    94   2e-20
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    52   9e-08
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo...    29   1.2  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    27   4.8  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    26   8.5  

>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
 Frame = +3

Query: 144 TKDALLPGIFFALL-VRWCVAAYPYSGYRKPPMYGDFEAQRHWQEITVHTPVTTWYHNTT 320
           +K    P +  +L+ ++W ++  PYSGY  PPMYGDFEAQRHW E+T+HTPV+ WY    
Sbjct: 23  SKFLFFPCLIMSLVFMQWLISIGPYSGYNTPPMYGDFEAQRHWMELTLHTPVSQWYF--- 79

Query: 321 QNDLEYWGMDYPP 359
             DL++WG+DYPP
Sbjct: 80  -RDLQWWGLDYPP 91



 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 57/146 (39%), Positives = 76/146 (52%), Gaps = 1/146 (0%)
 Frame = +1

Query: 361 LSAYHSLLMGLVADWL-DPESVRLFASRGYEDDSHKTFMRWTVFLSDLYFYATAVLCICI 537
           L+AY S   G++  +  +PE      SRG+E    K FMR TV  S L      ++    
Sbjct: 92  LTAYVSWFFGIIGHYFFNPEWFADVTSRGFESLELKLFMRSTVIASHLLILVPPLMFYSK 151

Query: 538 DAERVRAKETKWVFKRTDLSTILFLLYPGLILIDHGHFQYNCVSLGLFLWATFFIIAIEN 717
              R   +   +V +   L  +LF   P L+LIDHGHFQYNCV LGL ++A   ++    
Sbjct: 152 WWSR---RIPNFVDRNASLIMVLF--QPALLLIDHGHFQYNCVMLGLVMYAIANLLK-NQ 205

Query: 718 DVLATIFFVFALNYKQMELYHALPLF 795
            V AT FF  AL +KQM LY A P+F
Sbjct: 206 YVAATFFFCLALTFKQMALYFAPPIF 231


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 52.4 bits (120), Expect = 9e-08
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
 Frame = +1

Query: 592 LSTILFLLYPGLILIDHGHFQYNCVSLGLFLWATFFIIAIENDVLATIFFVFALNYKQME 771
           L+ I   L PGL++IDH HFQYN    GL LW+       +N +L+   F   + +K + 
Sbjct: 133 LTAIDIFLSPGLLIIDHIHFQYNGFLFGLLLWSIVLAKPEKNMLLSAAIFSALICFKHIF 192

Query: 772 LYHALPLFHLFA*KVFIGIPP-RXKFL 849
           LY A P + ++  +V+   P  R +FL
Sbjct: 193 LYVA-PAYFVYLLRVYCFTPNFRPQFL 218



 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +3

Query: 168 IFFALLVRWCVAAYPYSGYRKPPMYGDFEAQRHWQEITVHTPVTTWYHNTTQNDLEYWGM 347
           ++ A +    V  + +  YR      DFE  R+W  IT   P++ WY    ++ +  W +
Sbjct: 7   LYNAAIASTFVKVFLFPSYRST----DFEVHRNWLAITHSLPISEWY----KSSISEWTL 58

Query: 348 DYPP 359
           DYPP
Sbjct: 59  DYPP 62


>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 246

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 497 ICISMRQQSYVYA*TRNV*ELKKQNGCSRGLI--YQLSCFYCTP 622
           IC    Q+ YV A +  V  L K    S GLI  Y+++  Y TP
Sbjct: 152 ICFKREQEPYVIAASETVNTLNKSKANSAGLINLYEITKSYPTP 195


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 354 DSPCPNIQGHFASCYDTTLLPVCEQ*SLANVSELRSLHTSVVYD 223
           DS C N   +F  CYD   LP+     L + SEL  ++   ++D
Sbjct: 86  DSFCNNALQNFKLCYDDETLPLWMVYVLNDKSELVFIYDHSLFD 129


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 535 IDAERVRAKETKWVFKRTDLSTILFLLYPGLILIDHGHFQYNCVSL 672
           I+A R    ET+W+    D+     L++PG+     G+F + C SL
Sbjct: 17  INAVRYLGFETQWIRNPHDIEKAECLIFPGV-----GNFGFVCDSL 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,853,063
Number of Sequences: 5004
Number of extensions: 86877
Number of successful extensions: 208
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)