Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_H14
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0460 + 3486040-3486758,3486804-3486876,3487067-3487132,348... 93 2e-19
02_05_0356 + 28252154-28252897,28253171-28253377,28253473-282537... 55 7e-08
06_01_1138 - 9429447-9433868 31 0.95
09_02_0140 + 4879319-4879968,4881443-4881942,4884230-4884368,488... 31 1.3
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041... 31 1.3
09_04_0444 - 17649685-17650524 29 3.8
09_02_0261 - 6390672-6391112 29 6.7
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 29 6.7
>07_01_0460 +
3486040-3486758,3486804-3486876,3487067-3487132,
3488090-3488251,3488427-3488457,3488767-3489206
Length = 496
Score = 93.5 bits (222), Expect = 2e-19
Identities = 37/63 (58%), Positives = 46/63 (73%)
Frame = +3
Query: 171 FFALLVRWCVAAYPYSGYRKPPMYGDFEAQRHWQEITVHTPVTTWYHNTTQNDLEYWGMD 350
F ALL+R V+ PYSG P +GD+EAQRHW E+T+H P + WY NT+ NDL YWG+D
Sbjct: 144 FAALLLRVLVSVGPYSGQGVAPKFGDYEAQRHWMELTLHLPSSDWYRNTSANDLAYWGLD 203
Query: 351 YPP 359
YPP
Sbjct: 204 YPP 206
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 361 LSAYHSLLMGLVADWLDPESVRLFASRGYE 450
LSAY S L GL+ + P++V L +SRG+E
Sbjct: 207 LSAYQSRLHGLLLNASLPDAVALRSSRGFE 236
>02_05_0356 +
28252154-28252897,28253171-28253377,28253473-28253710,
28254853-28255220
Length = 518
Score = 55.2 bits (127), Expect = 7e-08
Identities = 45/146 (30%), Positives = 67/146 (45%)
Frame = +1
Query: 367 AYHSLLMGLVADWLDPESVRLFASRGYEDDSHKTFMRWTVFLSDLYFYATAVLCICIDAE 546
AY S L+ L A +D V L ++ ++R TV SDL ++VL + DA
Sbjct: 71 AYFSRLLALPAPLVDASLVSLPVPDAPPSFAYLLYLRLTVAFSDLLLLLSSVLLLATDAL 130
Query: 547 RVRAKETKWVFKRTDLSTILFLLYPGLILIDHGHFQYNCVSLGLFLWATFFIIAIENDVL 726
R + R LS L L P L+ +DH HFQYN +GL L + F + D+
Sbjct: 131 TRRRR-------RPFLSLALVLWSPALLAVDHVHFQYNGFLMGLLLLSLHF-LEQGRDLA 182
Query: 727 ATIFFVFALNYKQMELYHALPLFHLF 804
+ F L K + L A P++ ++
Sbjct: 183 GGVVFAALLCSKHLFLV-AAPVYFVY 207
Score = 33.9 bits (74), Expect = 0.18
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 246 DFEAQRHWQEITVHTPVTTWYHNTTQNDLEYWGMDYPP 359
DF+ R+W +T P WY + + W +DYPP
Sbjct: 35 DFDVHRYWLALTHALPARRWYTDASSQ----WTLDYPP 68
>06_01_1138 - 9429447-9433868
Length = 1473
Score = 31.5 bits (68), Expect = 0.95
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 261 SELRSLHTSVVYDIQNTDMRQHTNEQVM 178
SE+ +LH V DIQ T M +HT VM
Sbjct: 928 SEINNLHELEVLDIQQTKMPEHTTRDVM 955
>09_02_0140 +
4879319-4879968,4881443-4881942,4884230-4884368,
4886005-4886156,4886267-4886532,4886902-4887028,
4887111-4887179,4887270-4887518,4887636-4888012
Length = 842
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 87 KIYSNVTMTKRADPDRFTVTKDALLPGIFFALLVRWCVAAYPYSGYRKPPMYGDFEAQRH 266
+I+ NV R T +L+PG+ + LVR Y G R+PP++ +
Sbjct: 82 RIFDNVRSFPAGAAPRSCYTLRSLVPGLKY--LVRASFMYGNYDGLRRPPVFDLYAGVNF 139
Query: 267 WQEITV 284
W+ + +
Sbjct: 140 WRTVNI 145
>02_04_0621 -
24502383-24502476,24502532-24504015,24504125-24504177,
24504871-24504984,24505068-24505202,24505960-24506055,
24506692-24506827
Length = 703
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 350 VHAPIFKVILRRVMIPRCYRCVNSNLLPMSLSFEVSIHRWFTISRIRICGNTPTNK*C 177
VH PI +V V I R L + + + HR ++ +++CG+TPT C
Sbjct: 142 VHTPITQVSFEAVGISRNTEFFADILQRLGANSMIKKHRKESMRMMKVCGHTPTGTGC 199
>09_04_0444 - 17649685-17650524
Length = 279
Score = 29.5 bits (63), Expect = 3.8
Identities = 30/107 (28%), Positives = 41/107 (38%)
Frame = +3
Query: 246 DFEAQRHWQEITVHTPVTTWYHNTTQNDLEYWGMDYPPXISVS*LVDGPRCGLAGSGIRE 425
DF+ E PV++ Y Q+ L GM P + V GP CG G RE
Sbjct: 2 DFDDHDDGDEEMPPMPVSSSYETPPQHGLAGGGMAPKPPGEIGSRVKGPSCG--GGRYRE 59
Query: 426 ALRVKRLRR*LSQNIHALDGIPE*FVFLCDSSPMYMHRRGTCES*RN 566
L+ + HA+DG E F+ + + R C RN
Sbjct: 60 CLK----NHAVGIGGHAVDGCGE-FMAAGEEGTIDALRCAACNCHRN 101
>09_02_0261 - 6390672-6391112
Length = 146
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = -3
Query: 520 LLSHRNTNHSGIPSNA*MFCESHLRSLLTRRASRIPDPA 404
+ SH NT+HS +P N +F + L S L RR + +P+ A
Sbjct: 1 MASHPNTHHSTLPDNYDLF--AALASNLDRRDADLPNLA 37
>08_02_1442 + 27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = -2
Query: 323 LRRVMIPRCYRCVNSNLLPMSLSFEVSIHRWFTISRIRICGNTPTNK*CEKYTRQKRIFR 144
L+R++I RC RC + + +S S E + T S I +C N N + + + K +
Sbjct: 994 LKRLIIERCPRCKDIPTVWLSASLEYLSLSYMT-SLISLCKNIDGNTPVQLFPKLKELIL 1052
Query: 143 YRKP 132
+ P
Sbjct: 1053 FVLP 1056
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,554,745
Number of Sequences: 37544
Number of extensions: 514729
Number of successful extensions: 1054
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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