Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_H14
(906 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-6|CAA86666.1| 503|Caenorhabditis elegans Hypothetical pr... 114 7e-26
Z54342-12|CAA91145.2| 758|Caenorhabditis elegans Hypothetical p... 48 9e-06
Z54342-13|CAH60747.1| 123|Caenorhabditis elegans Hypothetical p... 38 0.007
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 31 1.5
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 31 1.5
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 31 1.5
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 30 2.0
AF003144-6|AAV58875.1| 521|Caenorhabditis elegans Amino acid tr... 29 6.0
AF003144-5|AAV58874.1| 537|Caenorhabditis elegans Amino acid tr... 29 6.0
>Z46676-6|CAA86666.1| 503|Caenorhabditis elegans Hypothetical
protein C08B11.8 protein.
Length = 503
Score = 114 bits (275), Expect = 7e-26
Identities = 62/145 (42%), Positives = 90/145 (62%)
Frame = +1
Query: 361 LSAYHSLLMGLVADWLDPESVRLFASRGYEDDSHKTFMRWTVFLSDLYFYATAVLCICID 540
++AYH L+G++++ ++ + V L SRGYE +HK FMR + + FY ++
Sbjct: 117 ITAYHHYLLGVISNKINKKWVELTTSRGYESIAHKLFMRLSAIIPFYIFYLPPLIFYF-- 174
Query: 541 AERVRAKETKWVFKRTDLSTILFLLYPGLILIDHGHFQYNCVSLGLFLWATFFIIAIEND 720
R+K K + + L LLYP L++ID+GHFQYN +SLGLFL AT+ +
Sbjct: 175 ---TRSK------KMSPILYALALLYPSLLVIDNGHFQYNSISLGLFL-ATYMFLTKNFT 224
Query: 721 VLATIFFVFALNYKQMELYHALPLF 795
++ +I FV ALNYKQMELYHALP+F
Sbjct: 225 IIGSILFVAALNYKQMELYHALPVF 249
Score = 90.2 bits (214), Expect = 2e-18
Identities = 35/60 (58%), Positives = 44/60 (73%)
Frame = +3
Query: 180 LLVRWCVAAYPYSGYRKPPMYGDFEAQRHWQEITVHTPVTTWYHNTTQNDLEYWGMDYPP 359
L + ++ P+SG +PPMYGD+EAQRHW EITV+ P+ WY N T NDL YWG+DYPP
Sbjct: 57 LCFQLAISLNPHSGESQPPMYGDYEAQRHWMEITVNLPIEQWYLNGTHNDLLYWGLDYPP 116
>Z54342-12|CAA91145.2| 758|Caenorhabditis elegans Hypothetical
protein C08H9.3a protein.
Length = 758
Score = 48.0 bits (109), Expect = 9e-06
Identities = 30/106 (28%), Positives = 48/106 (45%)
Frame = +1
Query: 469 FMRWTVFLSDLYFYATAVLCICIDAERVRAKETKWVFKRTDLSTILFLLYPGLILIDHGH 648
F R++V D+ + A L V K + +L LI+ D H
Sbjct: 99 FQRFSVIFCDILYIAVCALYSFRSPRLVSRIPKKLQQNGREACFVLLASLQALIICDSIH 158
Query: 649 FQYNCVSLGLFLWATFFIIAIENDVLATIFFVFALNYKQMELYHAL 786
FQYN + +FL + FF I E ++A + + LN+K + +Y+AL
Sbjct: 159 FQYNSMLTAIFLMSLFF-IDTERYLMAALSYSILLNFKHIYVYYAL 203
Score = 38.3 bits (85), Expect = 0.007
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 246 DFEAQRHWQEITVHTPVTTWYHNTTQNDLEYWGMDYPP 359
DFE R+W +T P+ WY T W +DYPP
Sbjct: 29 DFEVHRNWMAVTWQRPLCEWYTEATSE----WTLDYPP 62
>Z54342-13|CAH60747.1| 123|Caenorhabditis elegans Hypothetical
protein C08H9.3b protein.
Length = 123
Score = 38.3 bits (85), Expect = 0.007
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 246 DFEAQRHWQEITVHTPVTTWYHNTTQNDLEYWGMDYPP 359
DFE R+W +T P+ WY T W +DYPP
Sbjct: 29 DFEVHRNWMAVTWQRPLCEWYTEATSE----WTLDYPP 62
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +1
Query: 169 YFSHYLFVGVLPHI-----RILDIVNHRCMETSKLRDIGKRLLFTHR*QRGIITRRKMTL 333
+ SH+ FV + + RI+D NHR + + L+D+ +L H + + K
Sbjct: 148 FISHHPFVSIFHQVLLLLKRIIDSSNHRAAQRTGLKDVVWAILTGHYNEPIVPEVMKEIK 207
Query: 334 NIGAWTILRLSA 369
I W ++ LS+
Sbjct: 208 EIETWILMLLSS 219
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +1
Query: 169 YFSHYLFVGVLPHI-----RILDIVNHRCMETSKLRDIGKRLLFTHR*QRGIITRRKMTL 333
+ SH+ FV + + RI+D NHR + + L+D+ +L H + + K
Sbjct: 148 FISHHPFVSIFHQVLLLLKRIIDSSNHRAAQRTGLKDVVWAILTGHYNEPIVPEVMKEIK 207
Query: 334 NIGAWTILRLSA 369
I W ++ LS+
Sbjct: 208 EIETWILMLLSS 219
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +1
Query: 169 YFSHYLFVGVLPHI-----RILDIVNHRCMETSKLRDIGKRLLFTHR*QRGIITRRKMTL 333
+ SH+ FV + + RI+D NHR + + L+D+ +L H + + K
Sbjct: 148 FISHHPFVSIFHQVLLLLKRIIDSSNHRAAQRTGLKDVVWAILTGHYNEPIVPEVMKEIK 207
Query: 334 NIGAWTILRLSA 369
I W ++ LS+
Sbjct: 208 EIETWILMLLSS 219
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 192 WCVAAYPYSGYRK-PPMYGDFEAQRHWQEITVHTPVTTWYHNTT 320
W PYSGYR PP+Y +E + T P T TT
Sbjct: 253 WTYTVPPYSGYRTIPPVYNHYETVPPAAQTTPQPPCTPRTTTTT 296
>AF003144-6|AAV58875.1| 521|Caenorhabditis elegans Amino acid
transporter protein5, isoform b protein.
Length = 521
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 591 SINYLVFIVPRFNSYRSWSLSIQLCVTRFVFVGHFLHNS 707
+I + I+P F ++S +L+I +C+ FV F+H +
Sbjct: 403 AITVALVIIPIFYEFQSTALAIAICLFGFVLYYVFIHKA 441
>AF003144-5|AAV58874.1| 537|Caenorhabditis elegans Amino acid
transporter protein5, isoform a protein.
Length = 537
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 591 SINYLVFIVPRFNSYRSWSLSIQLCVTRFVFVGHFLHNS 707
+I + I+P F ++S +L+I +C+ FV F+H +
Sbjct: 403 AITVALVIIPIFYEFQSTALAIAICLFGFVLYYVFIHKA 441
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,129,826
Number of Sequences: 27780
Number of extensions: 482380
Number of successful extensions: 1168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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