Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_H14
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    26   0.54 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.8  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   5.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   8.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 789 PFSFICLESVYWNT 830
           PFSF+ L  VYW+T
Sbjct: 368 PFSFLILNVVYWST 381


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 577 FKRTDLSTILFLLYPGLILI 636
           F   +LSTI+F L P LI++
Sbjct: 210 FPLYELSTIIFFLIPMLIIL 229


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 256 LRDIGKRLLFTHR*QRGIIT 315
           + +I KRLLF+H  + G +T
Sbjct: 249 VNEIEKRLLFSHNDRLGFLT 268


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 42  DFDQILNCKSFKNVKKI 92
           DFD IL+   FK++ KI
Sbjct: 823 DFDAILDQNKFKDIIKI 839


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 261,767
Number of Sequences: 438
Number of extensions: 6144
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)