Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_H13
(887 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC002959-1|AAH02959.1| 518|Homo sapiens APEX nuclease (apurinic... 32 2.4
AY884244-1|AAW56941.1| 518|Homo sapiens APEX nuclease (apurinic... 32 2.4
AL020991-3|CAI43126.1| 518|Homo sapiens APEX nuclease (apurinic... 32 2.4
AJ011311-1|CAB45242.1| 518|Homo sapiens AP endonuclease XTH2, p... 32 2.4
AF119046-1|AAD43041.1| 518|Homo sapiens APE2 protein protein. 32 2.4
AB049211-1|BAB13764.1| 518|Homo sapiens apurinic/apyrimidinic e... 32 2.4
AB021260-1|BAA78422.1| 518|Homo sapiens APEX nuclease-like 2 pr... 32 2.4
BC027939-1|AAH27939.1| 600|Homo sapiens SNED1 protein protein. 32 3.2
AK074075-1|BAB84901.1| 522|Homo sapiens FLJ00146 protein protein. 32 3.2
AK074062-1|BAB84888.1| 1282|Homo sapiens FLJ00133 protein protein. 32 3.2
AF439717-1|AAQ04558.1| 1008|Homo sapiens insulin responsive sequ... 32 3.2
>BC002959-1|AAH02959.1| 518|Homo sapiens APEX nuclease
(apurinic/apyrimidinic endonuclease) 2 protein.
Length = 518
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 239 GLMSEFTKSEWKKV-SEGGAMETCHKLYTWVNHTVLMLLFQIF 364
G M EFT+ E + + SEG A+ T HK+ TW + L ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156
>AY884244-1|AAW56941.1| 518|Homo sapiens APEX nuclease
(apurinic/apyrimidinic endonuclease) 2 protein.
Length = 518
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 239 GLMSEFTKSEWKKV-SEGGAMETCHKLYTWVNHTVLMLLFQIF 364
G M EFT+ E + + SEG A+ T HK+ TW + L ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156
>AL020991-3|CAI43126.1| 518|Homo sapiens APEX nuclease
(apurinic/apyrimidinic endonuclease) 2 protein.
Length = 518
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 239 GLMSEFTKSEWKKV-SEGGAMETCHKLYTWVNHTVLMLLFQIF 364
G M EFT+ E + + SEG A+ T HK+ TW + L ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156
>AJ011311-1|CAB45242.1| 518|Homo sapiens AP endonuclease XTH2,
putative protein.
Length = 518
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 239 GLMSEFTKSEWKKV-SEGGAMETCHKLYTWVNHTVLMLLFQIF 364
G M EFT+ E + + SEG A+ T HK+ TW + L ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156
>AF119046-1|AAD43041.1| 518|Homo sapiens APE2 protein protein.
Length = 518
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 239 GLMSEFTKSEWKKV-SEGGAMETCHKLYTWVNHTVLMLLFQIF 364
G M EFT+ E + + SEG A+ T HK+ TW + L ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156
>AB049211-1|BAB13764.1| 518|Homo sapiens apurinic/apyrimidinic
endonuclease 2 protein.
Length = 518
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 239 GLMSEFTKSEWKKV-SEGGAMETCHKLYTWVNHTVLMLLFQIF 364
G M EFT+ E + + SEG A+ T HK+ TW + L ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156
>AB021260-1|BAA78422.1| 518|Homo sapiens APEX nuclease-like 2
protein protein.
Length = 518
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 239 GLMSEFTKSEWKKV-SEGGAMETCHKLYTWVNHTVLMLLFQIF 364
G M EFT+ E + + SEG A+ T HK+ TW + L ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156
>BC027939-1|AAH27939.1| 600|Homo sapiens SNED1 protein protein.
Length = 600
Score = 31.9 bits (69), Expect = 3.2
Identities = 23/65 (35%), Positives = 27/65 (41%)
Frame = -1
Query: 578 CPSRTLAGCGYCPSENGKTVCVGCYSGRRTSI*CAS*TSFPLLAARMSTEARSLASLQTS 399
C S G GYC + NG C C G T CA FP A +M S S+ +
Sbjct: 106 CFSSPCGGRGYCLASNGSHSCT-CKVG-YTGEDCAK-ELFPPTALKMERVEESGVSISWN 162
Query: 398 PSNSP 384
P N P
Sbjct: 163 PPNGP 167
>AK074075-1|BAB84901.1| 522|Homo sapiens FLJ00146 protein protein.
Length = 522
Score = 31.9 bits (69), Expect = 3.2
Identities = 23/65 (35%), Positives = 27/65 (41%)
Frame = -1
Query: 578 CPSRTLAGCGYCPSENGKTVCVGCYSGRRTSI*CAS*TSFPLLAARMSTEARSLASLQTS 399
C S G GYC + NG C C G T CA FP A +M S S+ +
Sbjct: 41 CFSSPCGGRGYCLASNGSHSCT-CKVG-YTGEDCAK-ELFPPTALKMERVEESGVSISWN 97
Query: 398 PSNSP 384
P N P
Sbjct: 98 PPNGP 102
>AK074062-1|BAB84888.1| 1282|Homo sapiens FLJ00133 protein protein.
Length = 1282
Score = 31.9 bits (69), Expect = 3.2
Identities = 23/65 (35%), Positives = 27/65 (41%)
Frame = -1
Query: 578 CPSRTLAGCGYCPSENGKTVCVGCYSGRRTSI*CAS*TSFPLLAARMSTEARSLASLQTS 399
C S G GYC + NG C C G T CA FP A +M S S+ +
Sbjct: 740 CFSSPCGGRGYCLASNGSHSCT-CKVG-YTGEDCAK-ELFPPTALKMERVEESGVSISWN 796
Query: 398 PSNSP 384
P N P
Sbjct: 797 PPNGP 801
>AF439717-1|AAQ04558.1| 1008|Homo sapiens insulin responsive
sequence DNA binding protein-1 protein.
Length = 1008
Score = 31.9 bits (69), Expect = 3.2
Identities = 23/65 (35%), Positives = 27/65 (41%)
Frame = -1
Query: 578 CPSRTLAGCGYCPSENGKTVCVGCYSGRRTSI*CAS*TSFPLLAARMSTEARSLASLQTS 399
C S G GYC + NG C C G T CA FP A +M S S+ +
Sbjct: 486 CFSSPCGGRGYCLASNGSHSCT-CKVG-YTGEDCAK-ELFPPTALKMERVEESGVSISWN 542
Query: 398 PSNSP 384
P N P
Sbjct: 543 PPNGP 547
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,710,420
Number of Sequences: 237096
Number of extensions: 2601626
Number of successful extensions: 5415
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5415
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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