Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_H12
         (929 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80442-1|AAB37663.1|  202|Caenorhabditis elegans Proteasome beta...   153   1e-37
Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...    63   2e-10
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    60   2e-09
L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome bet...    51   1e-06
AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome co...    51   1e-06
AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome al...    49   4e-06
Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical pr...    39   0.006
Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical pr...    38   0.008
Z77668-3|CAI46576.1|  284|Caenorhabditis elegans Hypothetical pr...    32   0.67 
Z77655-9|CAI46567.1|  284|Caenorhabditis elegans Hypothetical pr...    32   0.67 
AC006603-1|AAF39749.1|  772|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z54270-8|CAA91029.2|  301|Caenorhabditis elegans Hypothetical pr...    29   6.3  
U58727-2|AAB00582.2|  462|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U80442-1|AAB37663.1|  202|Caenorhabditis elegans Proteasome beta
           subunit protein 4 protein.
          Length = 202

 Score =  153 bits (372), Expect = 1e-37
 Identities = 76/194 (39%), Positives = 122/194 (62%), Gaps = 3/194 (1%)
 Frame = +3

Query: 183 LLGIQCNDFVMIAADQSNSHSIMIMKDDE-EKIYKISDRLVMGVIGDSGDTNQFAEYIAK 359
           L+GI   ++V++AAD++      I+ D E +K Y++  +L M  IG+ GD  QF ++  +
Sbjct: 7   LVGISTENYVILAADKATFAYGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTKR 66

Query: 360 NIQLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGY-DKENGPELYFMDYL 536
           N+QLY +RNGYE+ PS A  F RR++AE LRS   Y V+VL+GGY DKE+   L  +DYL
Sbjct: 67  NLQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVLIGGYDDKEDKAFLGSVDYL 126

Query: 537 ASSV-KVPFAAHGYGGYLSLSIMDRYHKKDATETEAYDILKKCVQEVHKRLFVSLPNFQV 713
           A+ + + P+   G+ G    +IMDR +KKD TE E   ++ KC+ E  +R   ++P ++V
Sbjct: 127 ANGLGQQPYLFRGFCGRFCYAIMDREYKKDMTEAEGLALMNKCIGEAKRRFVANIPGYKV 186

Query: 714 TVVNRDGIKVLXTI 755
            ++++ G + L  +
Sbjct: 187 VIIDKKGYRKLDDV 200


>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 37/153 (24%), Positives = 78/153 (50%)
 Frame = +3

Query: 210 VMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQLYKMRNG 389
           +++ AD   +   +I     EK++K+++ +     G + D +Q  + ++ N++L ++  G
Sbjct: 58  LVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKMLSGNLRLLELNTG 117

Query: 390 YELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSVKVPFAAH 569
            +     A    +++L  Y      Y   +L+GG D   GP LY      +++  PF A 
Sbjct: 118 RKARVITALRQAKQHLFNYQGYIGAY---LLIGGVDP-TGPHLYMCSANGTTMAFPFTAQ 173

Query: 570 GYGGYLSLSIMDRYHKKDATETEAYDILKKCVQ 668
           G G Y +++I++R  K D T+ EA  ++++ ++
Sbjct: 174 GSGSYAAITILERDFKVDMTKDEAEKLVQRALE 206


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 38/144 (26%), Positives = 66/144 (45%)
 Frame = +3

Query: 210 VMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQLYKMRNG 389
           +++A D   S    I      KI  I DR+V  + G + D   +   +AK   LY++R  
Sbjct: 83  IIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREK 142

Query: 390 YELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSVKVPFAAH 569
             +  SAA+ +    L  Y        V  ++ GYDK+ GP+++ +D      ++   + 
Sbjct: 143 TSITVSAASKYFANTLYGYRGQGLS--VGSMVAGYDKK-GPQIFKVDSEGDRCQLKVCSV 199

Query: 570 GYGGYLSLSIMDRYHKKDATETEA 641
           G G   +  I+D ++K   T+ EA
Sbjct: 200 GSGSLNAYGILDNHYKPKMTDDEA 223


>L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome beta
           subunit protein 6 protein.
          Length = 258

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
 Frame = +3

Query: 192 IQCNDFVMIAAD-QSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQ 368
           I   +F ++A+D +   + I I+  D EKI  ++D +++   G  GD  Q  + +   + 
Sbjct: 57  ISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLH 116

Query: 369 LYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSV 548
            Y+     ++     A    RNL  Y R   PY+   ++ G D+     ++  D +    
Sbjct: 117 KYRFDYRSDMSVDLCAELLSRNL--YYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIE 174

Query: 549 KVPFAAHGYGGYLSLSIMD 605
           ++ ++A G    + +  +D
Sbjct: 175 RLGYSASGAAEPMIIPFLD 193


>AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome
           component C5 protein.
          Length = 258

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
 Frame = +3

Query: 192 IQCNDFVMIAAD-QSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQ 368
           I   +F ++A+D +   + I I+  D EKI  ++D +++   G  GD  Q  + +   + 
Sbjct: 57  ISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLH 116

Query: 369 LYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSV 548
            Y+     ++     A    RNL  Y R   PY+   ++ G D+     ++  D +    
Sbjct: 117 KYRFDYRSDMSVDLCAELLSRNL--YYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIE 174

Query: 549 KVPFAAHGYGGYLSLSIMD 605
           ++ ++A G    + +  +D
Sbjct: 175 RLGYSASGAAEPMIIPFLD 193


>AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome alpha
           subunit protein 3 protein.
          Length = 250

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 5/197 (2%)
 Frame = +3

Query: 186 LGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNI 365
           LGI  ++ +++AA++ N H ++      EK+Y++SD +   V G + D N    ++    
Sbjct: 35  LGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWA 94

Query: 366 QLYKMRNGYELGPSAAASFTRRNLAEY--LRSSTPYFVNVLMGGYDKENGPELYFMDYLA 539
             Y+   G E+               Y  +    P+ V++L  G+DK  G +LY  D   
Sbjct: 95  ASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSG 154

Query: 540 SSVKVPFAAHGYGGYLSLSIMDRYHKKDATETEAYDILKKCVQEVHKRLFVSLPNFQV-- 713
           +         G     +++++ + +K    E EA  +    ++ + K L V L + +V  
Sbjct: 155 NYTGWKATCIGSNHQAAVTLLKQEYKSPNLE-EAKQL---AIKVLWKTLDVKLASEKVEM 210

Query: 714 -TVVNRDGIKVLXTINS 761
             +  RDG  VL  + +
Sbjct: 211 AVLTRRDGKTVLEELTT 227


>Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical
           protein C15H11.7 protein.
          Length = 246

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 5/203 (2%)
 Frame = +3

Query: 147 YDCKMSNINLQCLLGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSG 326
           Y  K  N      + ++  D  +IA  +    S+ I+ D    +Y+IS  +    IG   
Sbjct: 27  YAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSL-IVADTVTSVYQISQSVGCCAIGMIP 85

Query: 327 DTNQFAEYIAKNIQLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYF---VNVLMGGYD 497
           D     +        +K +NGY++ P    +    +L +Y   +         +L   YD
Sbjct: 86  DAKFQIKRAQGEAASWKYKNGYDM-PCELLAKKMADLNQYYTQNAEMRSLGCALLFISYD 144

Query: 498 KENGPELYFMDYLASSVKVPFAAHGYGGYLSLSIMDRYHKK--DATETEAYDILKKCVQE 671
            E GPE+Y +D       +   + G     + S +++  KK  + T TEA ++  + +Q 
Sbjct: 145 DEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQ- 203

Query: 672 VHKRLFVSLPNFQVTVVNRDGIK 740
               + V   + +V VV +D  K
Sbjct: 204 TSLGIDVRSKDLEVVVVTKDNSK 226


>Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical
           protein D1054.2 protein.
          Length = 231

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
 Frame = +3

Query: 171 NLQCLLGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEY 350
           N Q  +G++  D V++A +   S    ++ DD+ K+ +IS  +     G   D     + 
Sbjct: 30  NGQPSVGLRAKDGVVLATENVGS----VLTDDQPKVEQISKHIGCVYSGMGPDFRILVKK 85

Query: 351 IAKNIQLYKMRNGYELGPSAAASFTRRNLAEYLRSS--TPYFVNVLMGGYDKENGPELYF 524
             K    Y+M  G E+      +     + EY +S    P+  ++L+ G+DK  G  L F
Sbjct: 86  ARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLF 145


>Z77668-3|CAI46576.1|  284|Caenorhabditis elegans Hypothetical
           protein R11G10.3 protein.
          Length = 284

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -1

Query: 692 NKQSFVNFLNTLLKDVICLCFCSIFFMVTIHNTQT*ISTITMSCKWYL 549
           +++SFVN +   L  VICLC   + F+V  + T   +   T++ ++ L
Sbjct: 149 HEESFVNNIQVALSFVICLCLV-VLFLVNRYKTANSVGKSTLTTRYQL 195


>Z77655-9|CAI46567.1|  284|Caenorhabditis elegans Hypothetical
           protein R11G10.3 protein.
          Length = 284

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -1

Query: 692 NKQSFVNFLNTLLKDVICLCFCSIFFMVTIHNTQT*ISTITMSCKWYL 549
           +++SFVN +   L  VICLC   + F+V  + T   +   T++ ++ L
Sbjct: 149 HEESFVNNIQVALSFVICLCLV-VLFLVNRYKTANSVGKSTLTTRYQL 195


>AC006603-1|AAF39749.1|  772|Caenorhabditis elegans Hypothetical
           protein B0524.4 protein.
          Length = 772

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 573 YGGYLSLSIMDRYHKKDATETEAYDILKKCVQEVHKRLFVSLPNF 707
           + GYL+   + + HK   T  +A+DILK  ++ + K  F  +  +
Sbjct: 187 FNGYLNAMTLLKKHKDQDTIEKAFDILKASIRAMQKLNFKDVEKY 231


>Z54270-8|CAA91029.2|  301|Caenorhabditis elegans Hypothetical
           protein F11C1.4 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
 Frame = +3

Query: 300 VMGVIGDSGDTNQFAEYIAKNIQLYKMRNGYELGPSAAASFTRRN---LAEYLRSSTPYF 470
           V+G  G+ G    F   + +N+   + R G         + +  N   L   LR S  + 
Sbjct: 24  VLGNPGNDGFYTDFGRRLIRNLIAREERLGTRRVQFVFYTLSHLNHVLLPTSLRCSESHK 83

Query: 471 VNVLMGGYDKENGPELYFMDYLASSVKVPFAAHGYGGYLSLSIMDRYHKKD 623
           VN      D+      +  +YL    +V    HG G Y+ LSI+  Y K D
Sbjct: 84  VNERFSLADQVQHKLDFVKEYLPRGNRVYMFGHGDGAYMLLSILP-YIKDD 133


>U58727-2|AAB00582.2|  462|Caenorhabditis elegans Hypothetical
           protein D1005.2 protein.
          Length = 462

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 597 YSNLDIHHNHELQMVPSRLMLNSP*NTVQVHFLYHNHP 484
           +S   +HHNHEL   P   +  S  N+V+V  L   HP
Sbjct: 372 HSTFKVHHNHELGAPPVISLDPSIYNSVEVVDLKFPHP 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,586,598
Number of Sequences: 27780
Number of extensions: 355045
Number of successful extensions: 911
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)