Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_H11
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    29   1.2  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.7  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    27   4.7  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    27   4.7  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   6.2  

>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 104 INRRLLV*NTTII*NYIMPHFRIETNISRSKIPADFVVKAIPVLAK 241
           +NR L    TT   N ++PH+  + ++   K+ ADFV     +LAK
Sbjct: 612 VNRTLKF--TTAKYNGLVPHYLTDPSVGAGKLKADFVKDVNALLAK 655


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 411 IDYYGSTSFLAIYPMVWILFFIMFIQRSRG 322
           +D++    F AI  + W   FI+F+++++G
Sbjct: 88  VDFHAGYCFAAILSISWATGFILFLKKTQG 117


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = +2

Query: 158 PHF-RIETNISRSKIPADFVVKAIPV--LAKALGKPEQHVHNLPRRTYRQRWI*RNDFPR 328
           P F R E   ++S +P D  V  I      K   K       L + T R  W   N+ P 
Sbjct: 450 PSFSRYELQSAQSVLPKDLPVSVISAGKSMKRFKKWPDEQRQLSKLTQRTVWDIVNNAPH 509

Query: 329 DLWIN 343
           D+W++
Sbjct: 510 DVWLS 514


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = -1

Query: 425 ILSIL*IIMEAHHFSLFILWFGYCFL*CLSKDRVESRSFKSNVAGRFVLEGYVHAVQVYQ 246
           IL  + I+M+ H +++   W+ YC+    S ++++S+    +   R  +E Y H +  + 
Sbjct: 171 ILHSMVILMKLHSYNVVNGWYSYCY---HSLNKLQSKKTDLDDDERSSVEFYEHCLNHHG 227

Query: 245 EL*LTPV*LLPQNQLGFLILK--CWFLF 168
                P  L   N L FL +   C+ L+
Sbjct: 228 N--TYPENLTIPNALDFLFMPSLCYQLY 253


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 127 KHNNNLKLYNASL*NRNQHFKIK 195
           K +N ++LY+  L NRN+  KIK
Sbjct: 4   KQDNEVELYSIDLKNRNESAKIK 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,965
Number of Sequences: 5004
Number of extensions: 41829
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)