Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_H09
(915 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D61380-1|BAA09603.2| 189|Homo sapiens DJ-1 protein protein. 138 3e-32
BC008188-1|AAH08188.1| 189|Homo sapiens Parkinson disease (auto... 138 3e-32
AL034417-1|CAB52550.1| 189|Homo sapiens Parkinson disease (auto... 138 3e-32
AF021819-1|AAC12806.1| 189|Homo sapiens RNA-binding protein reg... 138 3e-32
AB073864-1|BAB71782.1| 189|Homo sapiens DJ-1 protein. 138 3e-32
>D61380-1|BAA09603.2| 189|Homo sapiens DJ-1 protein protein.
Length = 189
Score = 138 bits (334), Expect = 3e-32
Identities = 76/158 (48%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Frame = +3
Query: 270 SKSALVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEAL 449
SK ALVILA+GAEEMETVI VD++RR G+ VT+AGL G PV CSR V + PD SL +A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 450 AEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHEDNGKXXXXXXXXXXXXXXHGVARGR 629
E YD V+LPGG G+ +LS+S V +LK+ E+ H + G
Sbjct: 63 KE-GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGS 121
Query: 630 RVTSYPSTRDK-LSAGDYTYVEGERVVVDGNVVTSRGP 740
+VT++P +DK ++ G YTY E RV DG ++TSRGP
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSE-NRVEKDGLILTSRGP 158
>BC008188-1|AAH08188.1| 189|Homo sapiens Parkinson disease
(autosomal recessive, early onset) 7 protein.
Length = 189
Score = 138 bits (334), Expect = 3e-32
Identities = 76/158 (48%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Frame = +3
Query: 270 SKSALVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEAL 449
SK ALVILA+GAEEMETVI VD++RR G+ VT+AGL G PV CSR V + PD SL +A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 450 AEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHEDNGKXXXXXXXXXXXXXXHGVARGR 629
E YD V+LPGG G+ +LS+S V +LK+ E+ H + G
Sbjct: 63 KE-GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGS 121
Query: 630 RVTSYPSTRDK-LSAGDYTYVEGERVVVDGNVVTSRGP 740
+VT++P +DK ++ G YTY E RV DG ++TSRGP
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSE-NRVEKDGLILTSRGP 158
>AL034417-1|CAB52550.1| 189|Homo sapiens Parkinson disease
(autosomal recessive, early onset) 7 protein.
Length = 189
Score = 138 bits (334), Expect = 3e-32
Identities = 76/158 (48%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Frame = +3
Query: 270 SKSALVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEAL 449
SK ALVILA+GAEEMETVI VD++RR G+ VT+AGL G PV CSR V + PD SL +A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 450 AEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHEDNGKXXXXXXXXXXXXXXHGVARGR 629
E YD V+LPGG G+ +LS+S V +LK+ E+ H + G
Sbjct: 63 KE-GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGS 121
Query: 630 RVTSYPSTRDK-LSAGDYTYVEGERVVVDGNVVTSRGP 740
+VT++P +DK ++ G YTY E RV DG ++TSRGP
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSE-NRVEKDGLILTSRGP 158
>AF021819-1|AAC12806.1| 189|Homo sapiens RNA-binding protein
regulatory subunit protein.
Length = 189
Score = 138 bits (334), Expect = 3e-32
Identities = 76/158 (48%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Frame = +3
Query: 270 SKSALVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEAL 449
SK ALVILA+GAEEMETVI VD++RR G+ VT+AGL G PV CSR V + PD SL +A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 450 AEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHEDNGKXXXXXXXXXXXXXXHGVARGR 629
E YD V+LPGG G+ +LS+S V +LK+ E+ H + G
Sbjct: 63 KE-GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGS 121
Query: 630 RVTSYPSTRDK-LSAGDYTYVEGERVVVDGNVVTSRGP 740
+VT++P +DK ++ G YTY E RV DG ++TSRGP
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSE-NRVEKDGLILTSRGP 158
>AB073864-1|BAB71782.1| 189|Homo sapiens DJ-1 protein.
Length = 189
Score = 138 bits (334), Expect = 3e-32
Identities = 76/158 (48%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Frame = +3
Query: 270 SKSALVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEAL 449
SK ALVILA+GAEEMETVI VD++RR G+ VT+AGL G PV CSR V + PD SL +A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 450 AEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHEDNGKXXXXXXXXXXXXXXHGVARGR 629
E YD V+LPGG G+ +LS+S V +LK+ E+ H + G
Sbjct: 63 KE-GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGCGS 121
Query: 630 RVTSYPSTRDK-LSAGDYTYVEGERVVVDGNVVTSRGP 740
+VT++P +DK ++ G YTY E RV DG ++TSRGP
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSE-NRVEKDGLILTSRGP 158
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,770,997
Number of Sequences: 237096
Number of extensions: 1870989
Number of successful extensions: 3971
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3931
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11881370308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -