Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_H08
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   3.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.0  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   5.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 3.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 704 PPPPPPP 684
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 23.8 bits (49), Expect(2) = 3.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 704 PPPPPPP 684
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 21.4 bits (43), Expect(2) = 3.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 701 PPPPPPXXXXGXG 663
           PPPPPP      G
Sbjct: 337 PPPPPPPRSNAAG 349



 Score = 21.4 bits (43), Expect(2) = 3.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 701 PPPPPPXXXXGXG 663
           PPPPPP      G
Sbjct: 361 PPPPPPRSAPSTG 373


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 704 PPPPPPPXXXXGXG 663
           PPPPPPP    G G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 704 PPPPPPPXXXXGXGG 660
           PPPPPPP      GG
Sbjct: 775 PPPPPPPPPAVSAGG 789


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 704 PPPPPPPXXXXGXGG 660
           PPPPPPP      GG
Sbjct: 946 PPPPPPPPLVSAAGG 960


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,301,686
Number of Sequences: 5004
Number of extensions: 13994
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)