Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_H07
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    29   1.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.1  
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    27   4.7  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   6.3  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    26   6.3  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    26   8.3  

>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
 Frame = +3

Query: 480 CKYLSSINICRSLQIQQPTDRLIIKTIDVYSSLK*IRSKFNQILRSS--------FNLLE 635
           C Y  S+++C S  +  P   +I+   D  +  K  R  +   LR S        +++  
Sbjct: 214 CSYFDSVSLCLSKGLAAPVGSIIVGPRDFIAKAKWFRKAYGGGLRQSGMLAAAGLYSIQH 273

Query: 636 N*ENV-QIKKYNVDTQNRMDTIYTHIDRISQSSVLAL 743
           N   + Q+ KY ++     +++   ++  +QS+++ L
Sbjct: 274 NFPLLKQVHKYAIEVAEYAESLGIELEVPTQSNMVTL 310


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 163 TKYVIKKSTDWSHSERQSLWKEYEIDYLIQEAKVLLYLVLTFHCTL 300
           TK+    S DW  +  Q   + Y +  L+   K L YL L ++C L
Sbjct: 502 TKFFQSTSIDWVEAGLQVCRQGYNMLQLLIHRKGLTYLHLDYNCNL 547


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 600 NQILRSSFNLLEN*ENVQIKKYNVDTQNRMDTIYTHIDRI 719
           N IL  ++  L N EN+ I K      N     Y+H +RI
Sbjct: 75  NNILSDTYGSLYNPENILITKNGGGAGNNWANGYSHAERI 114


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 624  NLLEN*ENVQIKKYNVDTQNRMDTIYTHIDRISQSSVLALRVR 752
            NLL   EN Q+     DT+N +D +++   ++   ++   R+R
Sbjct: 949  NLLSTVENFQLSTLPPDTENAVDHVFSRQFKLRLMALPGSRIR 991


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 166 KYVIKKSTDWSHSERQSLWKEYEIDYLIQEAKVLLYLVLTFHC 294
           KY+ + S         +LWK+  I   I   K+L+  + +FHC
Sbjct: 470 KYLAEFSASLELDPNLALWKKQVIFSKIGHPKLLVMPISSFHC 512


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +3

Query: 573 SLK*IRSKFNQILRSS--FNLLEN*ENVQIKKYNVDTQNRMDTIYTHIDRISQSSV 734
           SL+ +  + ++ +RSS  FN+    EN  +   N+D Q ++D +   +D   +S+V
Sbjct: 208 SLEKLCERKDEEIRSSQAFNMTLREENDTLAAQNLDLQTQLDRLQRELDTNIRSNV 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,143
Number of Sequences: 5004
Number of extensions: 66088
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)