Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_H06
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50029-2|CAA90341.3|  537|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AC024811-1|AAF60776.1|  494|Caenorhabditis elegans Dnaj domain (...    28   6.9  
Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical pr...    24   7.8  

>Z50029-2|CAA90341.3|  537|Caenorhabditis elegans Hypothetical
           protein ZC504.2 protein.
          Length = 537

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 110 IXTNFNKRDGSXFPFPKFLK 51
           I  NF +RDGS FP P ++K
Sbjct: 332 ISLNFYRRDGSSFPMPHWMK 351


>AC024811-1|AAF60776.1|  494|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 28 protein.
          Length = 494

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +2

Query: 704 GGGGGGXXKKXXXXPXXKKKKKXGGGXXGGXFFFFF 811
           GGGGGG                 GGG  GG FFF F
Sbjct: 459 GGGGGGSHGFHNFHGFNPFGGGGGGGRGGGDFFFHF 494


>Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical
           protein Y48E1B.1 protein.
          Length = 497

 Score = 23.8 bits (49), Expect(2) = 7.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 722 PPPPPPP 702
           PPPPPPP
Sbjct: 357 PPPPPPP 363



 Score = 22.6 bits (46), Expect(2) = 7.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 731 FXXPPPPPP 705
           F  PPPPPP
Sbjct: 321 FILPPPPPP 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,408,544
Number of Sequences: 27780
Number of extensions: 193495
Number of successful extensions: 3818
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)