Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_H05
         (947 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   7.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   9.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 586 TPSRERERCPSHRPVPFARRSRQSEEATRRN 678
           TP +ER+   + +PV  +R+ ++  E    N
Sbjct: 790 TPKKERKTATTTQPVISSRKEQKKSEEKNIN 820


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 61  SIHK*EYKHTKLYPSD 108
           +I   EY HTK YP D
Sbjct: 54  AIQSGEYDHTKNYPFD 69


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 76  EYKHTKLYPSD 108
           EY HTK YP D
Sbjct: 62  EYDHTKNYPFD 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,073
Number of Sequences: 438
Number of extensions: 4039
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)