Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_H03
         (917 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-12|CAB70105.1|   90|Caenorhabditis elegans Hypothetical...    31   0.87 
Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p...    30   2.7  

>AL132949-12|CAB70105.1|   90|Caenorhabditis elegans Hypothetical
           protein Y53F4B.14 protein.
          Length = 90

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 163 MGNWKLEVGRMAMYTSFPXWIV-LFFQPT 246
           MG WKLE GR  +  +FP     LF QPT
Sbjct: 1   MGGWKLETGRFLLLITFPVGAFWLFNQPT 29


>Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical
           protein F54B8.6 protein.
          Length = 283

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -1

Query: 374 IPDFAFVSSSYPVLIFESLLYHVGFLV--GRFVFLYLLPILQNI 249
           + + AF+   YP L+F+++ Y +GFL+   RF+ +Y  P+   I
Sbjct: 77  VKNLAFILI-YPFLVFDTMRYTLGFLITFDRFIAIY-FPVFYQI 118


>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
           protein C52B9.8 protein.
          Length = 1336

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +2

Query: 248 KYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK 379
           K  ++++TN  ++I   E ++++  IQKLIQ+  +     L+ K
Sbjct: 218 KSMQQYITNENKRIAREEMKNEKNRIQKLIQEDEEGYRAMLDEK 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,764,564
Number of Sequences: 27780
Number of extensions: 241700
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)