Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_H02
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    39   0.001
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    35   0.012
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.34 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.60 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.79 
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   3.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   7.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.7  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   9.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = -1

Query: 684 PPXPPPXXGGGGGGXXXPPPPPP 616
           PP PPP  G  G G   PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 35.9 bits (79), Expect = 0.007
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -3

Query: 685 PPXPPPXXXGGGGGXPXXPPPPP 617
           PP PPP     G G P  PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.7 bits (61), Expect(2) = 0.14
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 623 GGGGXXXPPPPPPXXGGGXGGXXFFFXPP 709
           G  G   PPPPPP      GG  ++   P
Sbjct: 769 GVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 617 GGGGGGXXXPPPPPPXXGGG 676
           G  G G   PPPPPP    G
Sbjct: 769 GVAGAGPPPPPPPPPAVSAG 788



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -1

Query: 684 PPXPPPXXGGGGGGXXXPPPPPPP 613
           PP PPP    GG     P P   P
Sbjct: 778 PPPPPPAVSAGGSRYYAPAPQAEP 801



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 681 PXPPPXXGGGGGGXXXPPPPPP 616
           P PPP    GG     PPPPPP
Sbjct: 750 PVPPPAPIMGG---PPPPPPPP 768



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 615 GGGGGGXXGXPPPPPXXXGGG 677
           G  G G    PPPPP    GG
Sbjct: 769 GVAGAGPPPPPPPPPAVSAGG 789



 Score = 21.4 bits (43), Expect(2) = 0.14
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = +2

Query: 401 PXPPXKKNPPXFXXPXEKKKKXGXXLKKXXXGGXXPPPPXXG 526
           P PP    PP    P                GG  PPPP  G
Sbjct: 732 PPPP----PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.1 bits (77), Expect = 0.012
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
 Frame = -1

Query: 699 KKKXXPPXPP-------PXXGGGGGGXXXPPPPPPP 613
           KK+  PP PP       P  G G      PPPPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 31.5 bits (68), Expect = 0.15
 Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
 Frame = -1

Query: 705 GXKKKXXPPXPPPXXGGGGGGXXXPP-----PPPPP 613
           G      PP PPP      G    PP     PPPPP
Sbjct: 330 GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 31.1 bits (67), Expect = 0.20
 Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
 Frame = -3

Query: 706 GXKKKXXPPXPPPXXXGGGGGXPXXP-----PPPPP 614
           G      PP PPP      G  P  P     PPPPP
Sbjct: 330 GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 617 GGGGGGXXXPPPPPPXXGGGXG 682
           G G      PPPPPP      G
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAG 349


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -3

Query: 685 PPXPPPXXXGGGGGXPXXPPPPPP 614
           P  PPP     G   P  PPPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 29.9 bits (64), Expect = 0.45
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -1

Query: 684 PPXPPPXXGGGGGGXXXPPPPPPP 613
           PP PPP    G      PPPPPPP
Sbjct: 9   PPPPPPPP--GFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -3

Query: 685 PPXPPPXXXGGGGGXPXXPPPPPP 614
           PP  PP      G  P   PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 685 PPXPPPXXXGGGGGXPXXPPPP 620
           PP PPP         P  PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 614 GGGGGGGXXXPPPPPPXXGGGXGG 685
           G GG GG    PPP P   GG GG
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGG 212



 Score = 29.1 bits (62), Expect = 0.79
 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +3

Query: 615 GGGGGGXXGXPPPPPXXXG-GGXGG 686
           GG GGG  G PP P    G GG GG
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGG 215



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +2

Query: 617 GGGGGGXXXPPPPPPXXGGGXGGXXFF 697
           GG GGG   PPP P    GG GG   F
Sbjct: 191 GGFGGGSGGPPPGP----GGFGGFGGF 213


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 669 PXXGGGGGGXXXPPPPPPP 613
           P  G    G   PPPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPPP 313



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 673 PPXXXGGGGGXPXXPPPPPP 614
           P       GG P  PPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPPPP 314



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 672 PPXXGGGGGGXXXPPPPPPP 613
           P       GG   PPPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPPPP 314



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 614 GGGGGGGXXXPPPPPP 661
           G    GG   PPPPPP
Sbjct: 298 GDSANGGLPPPPPPPP 313


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 685 PPXPPPXXXGGGGGXPXXPPPPP 617
           P  P      G GG P  PPPPP
Sbjct: 272 PAMPMMNVPMGPGGAPLVPPPPP 294


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -3

Query: 685 PPXPPPXXXGGGGGXPXXPPPPPP 614
           P  PP          P  PPPPPP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPP 244



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -1

Query: 684 PPXPPPXXGGGGGGXXXPPPPPPP 613
           P  PP            PPPPPPP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPP 244


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 676  PPPXXXGGGGGXPXXPPPPPP 614
            PPP       G P  PPPP P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLP 1736


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
            Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 5    GFPXRXTIGEFLKILIQRXGV 67
            GFP R T+G+ +++L  + GV
Sbjct: 964  GFPSRMTVGKMIELLSGKVGV 984


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,522
Number of Sequences: 5004
Number of extensions: 32975
Number of successful extensions: 305
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)