Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_H01
         (997 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    35   0.016
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.19 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.4  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    27   3.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   4.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.1 bits (77), Expect = 0.016
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +1

Query: 85  PPPPPXXXXGXPXXXGGXXGGXXPPPPPPXXXXXGG 192
           PPPP     G P    G      PPPPPP      G
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349



 Score = 33.9 bits (74), Expect = 0.036
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = +2

Query: 86  PPPPXXXXGXPXXXXGGXXGGXXPPPPPPXXXXXGAPP 199
           PPP     G P    G       PPPPPP     G+ P
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP 352



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 85  PPPPPXXXXGXPXXXGGXXGGXXPPPPPP 171
           PPPPP              G   PPPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = +2

Query: 155 PPPPPPXXXXXGAPPXXXXXXXGGXXXKKKXXXPPPXXXXXXXXXXXXPP 304
           PPPPPP     G PP       G          PPP            PP
Sbjct: 312 PPPPPPSRRNRGKPP------IGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355



 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/39 (33%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
 Frame = +1

Query: 85  PPPPPXXXXGXPXXXGGXXGGXXPPP-PPPXXXXXGGPP 198
           PP PP      P           PPP PPP       PP
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPP 268


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
 Frame = +1

Query: 85  PPPPPXXXXGXPXXX----GGXXGGXXPPPPPPXXXXXGG 192
           P PPP    G P       G    G  PPPPPP     GG
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 31.5 bits (68), Expect = 0.19
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 144 GGXXPPPPPPXXXXGGPP 197
           GG  PPPPPP     GPP
Sbjct: 759 GGPPPPPPPPGVAGAGPP 776



 Score = 31.1 bits (67), Expect = 0.25
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +2

Query: 65  PGXXXLNPPPPXXXXGXPXXXXGGXXGGXXPPPPPP 172
           P    + PP P      P     G  G   PPPPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +3

Query: 159 PPPPPXXXXGGPPXXXXXXXXGGXXKKKXXXXPPPP 266
           P PPP    GGPP         G         PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAG--PPPPPPPPP 783


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -3

Query: 908 GAPPGGXXXG-GGXGGXPXGXRGAP 837
           G  PGG   G GG GG P G  G P
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGP 265



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
 Frame = -3

Query: 941 PPPPPKXXXPGGAPPGGXXXGG--GXGGXPXGXRGAP 837
           PP P      GG    G   GG  G GG P G  G P
Sbjct: 201 PPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP 237


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 914 PGGAPPGGXXXGGGXGGXPXGXRGAP 837
           PGGAP  G   GG  GG P G    P
Sbjct: 615 PGGAP--GGMPGGAPGGAPGGADNGP 638


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 154  PPPPPPXXXXXGGPP 198
            PPPPPP      GPP
Sbjct: 1882 PPPPPPMALPKAGPP 1896


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 143 GGXXPPPPPPXXXXXGAPP 199
           G   PPPPPP       PP
Sbjct: 7   GNPPPPPPPPGFEPPSQPP 25



 Score = 22.2 bits (45), Expect(2) = 6.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 843 PPXSPRXXPPPP 878
           PP +P   PPPP
Sbjct: 5   PPGNPPPPPPPP 16



 Score = 22.2 bits (45), Expect(2) = 6.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 951 PXXXXPPPPPP 983
           P    PPPPPP
Sbjct: 20  PPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 85   PPPPPXXXXGXPXXXGGXXGGXXPPPPP 168
            PPPPP      P       G    PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,783
Number of Sequences: 5004
Number of extensions: 54110
Number of successful extensions: 408
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)