Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_H01
         (997 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.26 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.26
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = -3

Query: 956 PXXXXPPPPPKXXXPGGAPPGGXXXGGGXGGXPXGXRGAPP 834
           P    P P P       AP  G       G  P G  GAPP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +3

Query: 936 GGXPXPXXXXPPPPPPQKXG 995
           G    P    PPPPPP   G
Sbjct: 333 GDSDTPPKPAPPPPPPSSSG 352



 Score = 23.0 bits (47), Expect = 4.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 968 PPPPPPKXGG 997
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 7.5
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -3

Query: 956 PXXXXPPPPPKXXXPGGA 903
           P    PPPPP    P  A
Sbjct: 339 PKPAPPPPPPSSSGPDSA 356


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 967  PPPPPPKXG 993
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 967  PPPPPPKXGG 996
            PPPPPP   G
Sbjct: 1356 PPPPPPPSSG 1365



 Score = 21.8 bits (44), Expect = 9.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 156  PPPPPPXXXXG 188
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 955  GXXXPPPPPPK 987
            G   PPPPPP+
Sbjct: 1855 GSPEPPPPPPR 1865



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 142  GGXXPPPPPP 171
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864



 Score = 21.8 bits (44), Expect = 9.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 945  PXPXXXXPPPPPPQ 986
            P      PPPPPP+
Sbjct: 1852 PVSGSPEPPPPPPR 1865


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 296,968
Number of Sequences: 438
Number of extensions: 11184
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33016347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)