Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_G23
         (933 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41109-5|AAB37035.1|  149|Caenorhabditis elegans Heat shock prot...    42   8e-04
U41109-4|AAQ62453.1|  148|Caenorhabditis elegans Heat shock prot...    42   8e-04
U39645-6|AAA80366.1|  368|Caenorhabditis elegans Heat shock prot...    36   0.055
U29612-8|AAW57827.1|  108|Caenorhabditis elegans Heat shock prot...    33   0.22 
U29612-7|AAO61437.1|  205|Caenorhabditis elegans Heat shock prot...    33   0.22 
U29612-6|AAA68804.1|  219|Caenorhabditis elegans Heat shock prot...    33   0.22 
Z35640-2|CAA84703.1|  159|Caenorhabditis elegans Hypothetical pr...    31   1.6  
U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter...    29   6.3  
L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.     29   6.3  
AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical ...    28   8.3  

>U41109-5|AAB37035.1|  149|Caenorhabditis elegans Heat shock protein
           protein 17,isoform a protein.
          Length = 149

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +2

Query: 314 ITSNKDKFXVTXDVXXXTPXEISXKTXXGYVIVEGKXEERQXXXXYXSRXYTRRYALPQX 493
           + +N  ++ V+ DV    P E+        +I+EGK  E+        R + R+Y LP  
Sbjct: 50  VVNNDQEYNVSVDVSQFEPEELKVNIVDNQLIIEGKHNEKTDKYGQVERHFVRKYNLPTG 109

Query: 494 CNPEHCR 514
             PE  +
Sbjct: 110 VRPEQIK 116


>U41109-4|AAQ62453.1|  148|Caenorhabditis elegans Heat shock protein
           protein 17,isoform b protein.
          Length = 148

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +2

Query: 314 ITSNKDKFXVTXDVXXXTPXEISXKTXXGYVIVEGKXEERQXXXXYXSRXYTRRYALPQX 493
           + +N  ++ V+ DV    P E+        +I+EGK  E+        R + R+Y LP  
Sbjct: 49  VVNNDQEYNVSVDVSQFEPEELKVNIVDNQLIIEGKHNEKTDKYGQVERHFVRKYNLPTG 108

Query: 494 CNPEHCR 514
             PE  +
Sbjct: 109 VRPEQIK 115


>U39645-6|AAA80366.1|  368|Caenorhabditis elegans Heat shock protein
           protein 43 protein.
          Length = 368

 Score = 35.5 bits (78), Expect = 0.055
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +2

Query: 302 VXFTITSNKDKFXVTXDVXXXTPXEISXKTXXGYVIVEGKXEERQXXXXYXSRXYTRRYA 481
           V   + ++  +F V  D     P EI  KT    +++EG+ E+ +    +    + R+Y 
Sbjct: 103 VNSNVVNDDRRFAVDMDCYQFRPEEIQVKTLDDTLMIEGRHEDIRDKDNFTKMYFVRKYQ 162

Query: 482 LPQ 490
           LP+
Sbjct: 163 LPR 165


>U29612-8|AAW57827.1|  108|Caenorhabditis elegans Heat shock protein
           protein 25,isoform c protein.
          Length = 108

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 350 DVXXXTPXEISXKTXXGYVIVEGKXEERQXXXXYXSRXYTRRYALPQXCNPE 505
           DV    P E++ KT    ++V  K EE+        R Y + + LP+  NPE
Sbjct: 33  DVANYKPEEVTVKTIDNRLLVHAKHEEKTPQRTVF-REYNQEFLLPRGTNPE 83


>U29612-7|AAO61437.1|  205|Caenorhabditis elegans Heat shock protein
           protein 25,isoform b protein.
          Length = 205

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 350 DVXXXTPXEISXKTXXGYVIVEGKXEERQXXXXYXSRXYTRRYALPQXCNPE 505
           DV    P E++ KT    ++V  K EE+        R Y + + LP+  NPE
Sbjct: 130 DVANYKPEEVTVKTIDNRLLVHAKHEEKTPQRTVF-REYNQEFLLPRGTNPE 180


>U29612-6|AAA68804.1|  219|Caenorhabditis elegans Heat shock protein
           protein 25,isoform a protein.
          Length = 219

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 350 DVXXXTPXEISXKTXXGYVIVEGKXEERQXXXXYXSRXYTRRYALPQXCNPE 505
           DV    P E++ KT    ++V  K EE+        R Y + + LP+  NPE
Sbjct: 144 DVANYKPEEVTVKTIDNRLLVHAKHEEKTPQRTVF-REYNQEFLLPRGTNPE 194


>Z35640-2|CAA84703.1|  159|Caenorhabditis elegans Hypothetical
           protein F43D9.4 protein.
          Length = 159

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +2

Query: 314 ITSNKDKFXVTXDVXXXTPXEISXKTXXGYVIVEGKXEERQXXXXYXSRXYTRRYALPQX 493
           + +   KF V  DV    P E+        + +EG  E +     +  R +TR++ LP+ 
Sbjct: 46  VENTAQKFCVKLDVAAFKPEELKVNLEGHVLTIEGHHEVKTEHG-FSKRSFTRQFTLPKD 104

Query: 494 CNPEH 508
            +  H
Sbjct: 105 VDLAH 109


>U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 2 protein.
          Length = 380

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = -2

Query: 578 LXGXRSPGSDHGHHAVRGXPRFDSVRGYSXVXXRNAACTXERXXXAXPASP 426
           + G R P  D G  A+ G P  D   G       NA+C  ER     P  P
Sbjct: 121 IPGERGPSGDSGLPALPGAPGPDGAPGRPGTTP-NASCIPERVFEPPPCLP 170


>L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = -2

Query: 578 LXGXRSPGSDHGHHAVRGXPRFDSVRGYSXVXXRNAACTXERXXXAXPASP 426
           + G R P  D G  A+ G P  D   G       NA+C  ER     P  P
Sbjct: 121 IPGERGPSGDSGLPALPGAPGPDGAPGRPGTTP-NASCIPERVFEPPPCLP 170


>AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical
           protein C18E3.3 protein.
          Length = 893

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 585 RAXPITQXGPXRKEXNEPTAEDEXDETKXGXXEXCESQSVPC 710
           +A  + Q G  R   N+P +ED+    +      C   ++PC
Sbjct: 309 QAMEVVQQGRKRLSENDPISEDDSKRLRTQKSAFCIRSTIPC 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,937,734
Number of Sequences: 27780
Number of extensions: 144774
Number of successful extensions: 218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)