Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_G19
         (910 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF177941-1|AAF59902.1| 1745|Homo sapiens collagen type V alpha 3...    31   4.4  
AB209175-1|BAD92412.1| 1658|Homo sapiens collagen, type V, alpha...    31   4.4  

>AF177941-1|AAF59902.1| 1745|Homo sapiens collagen type V alpha 3
           chain protein.
          Length = 1745

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 23/65 (35%), Positives = 26/65 (40%)
 Frame = -3

Query: 266 FXIFXXGGXKX*KGGPXSKXPKKXXF*NPPALXKPGPKGTPRQNFWXGSALXPGXPLXQS 87
           F IF   G K  KG P +   K   F  PP    PGP+G    +   G    PG P    
Sbjct: 366 FQIFPGAGEKGAKGEP-AVIEKGQQFEGPPGA--PGPQGVVGPSGPPGPPGFPGDPGPPG 422

Query: 86  PVALP 72
           P  LP
Sbjct: 423 PAGLP 427


>AB209175-1|BAD92412.1| 1658|Homo sapiens collagen, type V, alpha 3
           preproprotein variant protein.
          Length = 1658

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 23/65 (35%), Positives = 26/65 (40%)
 Frame = -3

Query: 266 FXIFXXGGXKX*KGGPXSKXPKKXXF*NPPALXKPGPKGTPRQNFWXGSALXPGXPLXQS 87
           F IF   G K  KG P +   K   F  PP    PGP+G    +   G    PG P    
Sbjct: 279 FQIFPGAGEKGAKGEP-AVIEKGQQFEGPPGA--PGPQGVVGPSGPPGPPGFPGDPGPPG 335

Query: 86  PVALP 72
           P  LP
Sbjct: 336 PAGLP 340


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,630,329
Number of Sequences: 237096
Number of extensions: 1441439
Number of successful extensions: 3645
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3565
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11770329464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)