Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_G19
(910 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 30 2.6
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 30 2.6
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 4.6
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 29 4.6
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 29 4.6
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 29 4.6
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 29 4.6
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 6.1
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 6.1
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +1
Query: 73 GSATGDCXKGXPGXNAEPXQKFCLGVPFGPGXKRAGG 183
G TG C G PG P + G P PG A G
Sbjct: 111 GGCTGCCNPGPPGPGGRPGKPGTPGKPGAPGNPGASG 147
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 88 DCXKGXPGXNAEPXQKFCLGVPFGPGXKRAGG 183
DC G PG + P QK G P PG R+GG
Sbjct: 170 DCPAGPPGPSGAPGQKGPSGAPGQPG--RSGG 199
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +1
Query: 64 ALRGSATGDCXKGXPGXNAEPXQKFCLGVPFGPGXKRAGG 183
A G TG C G PG P + G P PG A G
Sbjct: 98 AAGGGCTGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGAAG 137
>Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical
protein F57B1.4 protein.
Length = 317
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 88 DCXKGXPGXNAEPXQKFCLGVPFGPGXKRAGG 183
DC G PG + P QK G P PG ++GG
Sbjct: 173 DCPAGPPGPSGAPGQKGPSGAPGAPG--QSGG 202
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.2 protein.
Length = 316
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 88 DCXKGXPGXNAEPXQKFCLGVPFGPGXKRAGG 183
DC G PG + P QK G P PG ++GG
Sbjct: 172 DCPAGPPGPSGAPGQKGPSGAPGAPG--QSGG 201
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.1 protein.
Length = 316
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 88 DCXKGXPGXNAEPXQKFCLGVPFGPGXKRAGG 183
DC G PG + P QK G P PG ++GG
Sbjct: 172 DCPAGPPGPSGAPGQKGPSGAPGAPG--QSGG 201
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 427 GGXKPPPPXXGGXXXKKKXXGXXXKXPPP 513
GG PPPP GG G PPP
Sbjct: 92 GGIPPPPPMMGGIPPPPPMFGAPPPPPPP 120
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 88 DCXKGXPGXNAEPXQKFCLGVPFGPGXKRAGG 183
DC G PG + P QK G P PG ++GG
Sbjct: 172 DCPAGPPGPSGAPGQKGPSGAPGAPG--QSGG 201
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 88 DCXKGXPGXNAEPXQKFCLGVPFGPGXKRAGG 183
DC G PG + P QK G P PG ++GG
Sbjct: 172 DCPAGPPGPSGAPGQKGPSGAPGAPG--QSGG 201
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein
114 protein.
Length = 321
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 58 ILALRGSATGDCXKGXPGXNAEPXQKFCLGVPFGPG 165
I A G + G C G PG N +P + G P PG
Sbjct: 109 IEAAGGGSCGGCCPGGPGPNGKPGKPGRPGKPGAPG 144
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 88 DCXKGXPGXNAEPXQKFCLGVPFGPGXKRAGG 183
DC G PG + P QK G P PG ++GG
Sbjct: 207 DCPAGPPGPSGAPGQKGPSGAPGAPG--QSGG 236
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 182 PPALXKPGPKGTPRQNFWXGSALXPGXPLXQSPVALPRSAKIL 54
PP PG GTP G+ PG P Q P +P +I+
Sbjct: 684 PPGDSFPGQPGTPGYKGERGADGLPGLPGAQGPRGIPAPLRIV 726
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 182 PPALXKPGPKGTPRQNFWXGSALXPGXPLXQSPVALPRSAKIL 54
PP PG GTP G+ PG P Q P +P +I+
Sbjct: 683 PPGDSFPGQPGTPGYKGERGADGLPGLPGAQGPRGIPAPLRIV 725
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,291,386
Number of Sequences: 27780
Number of extensions: 188876
Number of successful extensions: 747
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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