Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_G18
(982 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U02461-1|AAA81888.1| 276|Drosophila melanogaster dTFIIF30 protein. 56 7e-08
U25188-1|AAA86888.1| 277|Drosophila melanogaster initiation fac... 55 1e-07
AY071514-1|AAL49136.1| 277|Drosophila melanogaster RE56801p pro... 55 1e-07
AE014297-1190|AAF54548.1| 277|Drosophila melanogaster CG6538-PA... 55 1e-07
>U02461-1|AAA81888.1| 276|Drosophila melanogaster dTFIIF30 protein.
Length = 276
Score = 56.0 bits (129), Expect = 7e-08
Identities = 48/171 (28%), Positives = 66/171 (38%), Gaps = 2/171 (1%)
Frame = +1
Query: 241 DRXXTXQSXGXGXWXVXVPXYXAHXXEKAPXNIEVGXLXISXVPGTRAXVQLSLFXSSAM 420
D+ + G G W V VP Y A EKAP N++VG L I+ PG +A V LSL +
Sbjct: 13 DKDLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLA 72
Query: 421 F--KGPW*TKHTKRTXRLMFQTLILXL*VYXRIXXXXXXXXXXXXXXXFTWRVGXYTKLE 594
+ T+H ++ QTL + + KLE
Sbjct: 73 LDPEEKIPTEHILDVSQVTKQTLGYSRTWHRPMARRTRLPRRHSDNEKLYMEGRIVQKLE 132
Query: 595 CGPPDDVTYYKLXX*LP*GXASMASATXCXXLTRLXRTFKPVSDPPPNIXY 747
C P D Y KL L + + ++ + FKPV D NI Y
Sbjct: 133 CRPIADNCYMKLK--LESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEY 181
>U25188-1|AAA86888.1| 277|Drosophila melanogaster initiation factor
TFIIF smallsubunit protein.
Length = 277
Score = 55.2 bits (127), Expect = 1e-07
Identities = 49/172 (28%), Positives = 68/172 (39%), Gaps = 3/172 (1%)
Frame = +1
Query: 241 DRXXTXQSXGXGXWXVXVPXYXAHXXEKAPXNIEVGXLXISXVPGTRAXVQLSLFXSSAM 420
D+ + G G W V VP Y A EKAP N++VG L I+ PG +A V LSL +
Sbjct: 13 DKDLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLA 72
Query: 421 F--KGPW*TKHTKRTXRLMFQTLILXL*VYXRIXXXXXXXXXXXXXXXFTWRVGXYT-KL 591
+ T+H ++ QTL + + + G KL
Sbjct: 73 LDPEEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIVQKL 132
Query: 592 ECGPPDDVTYYKLXX*LP*GXASMASATXCXXLTRLXRTFKPVSDPPPNIXY 747
EC P D Y KL L + + ++ + FKPV D NI Y
Sbjct: 133 ECRPIADNCYMKLK--LESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEY 182
Score = 41.9 bits (94), Expect = 0.001
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Frame = +3
Query: 465 LDVSNVNTXSLGVXSHIAPTN------TDSXXPETDNLYMEGRXVHQIGMR 599
LDVS V +LGV SH+AP++ T + P+ + LYMEGR V ++ R
Sbjct: 85 LDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIVQKLECR 135
>AY071514-1|AAL49136.1| 277|Drosophila melanogaster RE56801p
protein.
Length = 277
Score = 55.2 bits (127), Expect = 1e-07
Identities = 49/172 (28%), Positives = 68/172 (39%), Gaps = 3/172 (1%)
Frame = +1
Query: 241 DRXXTXQSXGXGXWXVXVPXYXAHXXEKAPXNIEVGXLXISXVPGTRAXVQLSLFXSSAM 420
D+ + G G W V VP Y A EKAP N++VG L I+ PG +A V LSL +
Sbjct: 13 DKDLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLA 72
Query: 421 F--KGPW*TKHTKRTXRLMFQTLILXL*VYXRIXXXXXXXXXXXXXXXFTWRVGXYT-KL 591
+ T+H ++ QTL + + + G KL
Sbjct: 73 LDPEEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIVQKL 132
Query: 592 ECGPPDDVTYYKLXX*LP*GXASMASATXCXXLTRLXRTFKPVSDPPPNIXY 747
EC P D Y KL L + + ++ + FKPV D NI Y
Sbjct: 133 ECRPIADNCYMKLK--LESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEY 182
Score = 41.9 bits (94), Expect = 0.001
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Frame = +3
Query: 465 LDVSNVNTXSLGVXSHIAPTN------TDSXXPETDNLYMEGRXVHQIGMR 599
LDVS V +LGV SH+AP++ T + P+ + LYMEGR V ++ R
Sbjct: 85 LDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIVQKLECR 135
>AE014297-1190|AAF54548.1| 277|Drosophila melanogaster CG6538-PA
protein.
Length = 277
Score = 55.2 bits (127), Expect = 1e-07
Identities = 49/172 (28%), Positives = 68/172 (39%), Gaps = 3/172 (1%)
Frame = +1
Query: 241 DRXXTXQSXGXGXWXVXVPXYXAHXXEKAPXNIEVGXLXISXVPGTRAXVQLSLFXSSAM 420
D+ + G G W V VP Y A EKAP N++VG L I+ PG +A V LSL +
Sbjct: 13 DKDLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLA 72
Query: 421 F--KGPW*TKHTKRTXRLMFQTLILXL*VYXRIXXXXXXXXXXXXXXXFTWRVGXYT-KL 591
+ T+H ++ QTL + + + G KL
Sbjct: 73 LDPEEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIVQKL 132
Query: 592 ECGPPDDVTYYKLXX*LP*GXASMASATXCXXLTRLXRTFKPVSDPPPNIXY 747
EC P D Y KL L + + ++ + FKPV D NI Y
Sbjct: 133 ECRPIADNCYMKLK--LESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEY 182
Score = 41.9 bits (94), Expect = 0.001
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Frame = +3
Query: 465 LDVSNVNTXSLGVXSHIAPTN------TDSXXPETDNLYMEGRXVHQIGMR 599
LDVS V +LGV SH+AP++ T + P+ + LYMEGR V ++ R
Sbjct: 85 LDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIVQKLECR 135
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,146,451
Number of Sequences: 53049
Number of extensions: 449138
Number of successful extensions: 1067
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4935487923
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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