Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_G17
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.6  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   2.8  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   8.6  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   8.6  

>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -2

Query: 405 SSLSLNIHCPHSLASHKTGSSRL---CPLSDPESSGNLYSH 292
           S ++ N H PH + +   G SR+     L  P SS + YSH
Sbjct: 682 SGVAANAHLPHRVPNEHGGVSRIGNSNALGQPVSSSSSYSH 722


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 230 KDMXDSDLIDVESX-YFXDHQTWLYKLPEDSGSESGHNRLEPV 355
           +D+ D DL D +   +  DH   L+ +  D  +  GH+R +PV
Sbjct: 517 EDVFDRDLRDFQLITWSKDHHVRLWPIGNDILNSMGHDRTKPV 559


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 280 GKIXRFHVDQIRIXHIFVYILISLIHNTNE-HDT 182
           G     H  ++ + H F YILIS  +  N  HDT
Sbjct: 475 GDFNAIHSRKVPVTHTFTYILISKTNRWNSLHDT 508


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 380 VLIHWPATRQVPVDYVHFLTLNPL 309
           VL HW  TR++     H L   PL
Sbjct: 852 VLDHWDITRRIEYGIAHILCFRPL 875


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +2

Query: 308 PEDSGSESGHNRLE 349
           PEDSGSE G N LE
Sbjct: 356 PEDSGSEIGSNSLE 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,209,599
Number of Sequences: 5004
Number of extensions: 60360
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)