Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_G16
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    62   5e-12
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    59   6e-11
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    57   3e-10
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    57   3e-10
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    56   3e-10
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    56   6e-10
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    54   2e-09
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    53   4e-09
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        38   2e-04
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.7  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 62.5 bits (145), Expect = 5e-12
 Identities = 27/61 (44%), Positives = 44/61 (72%)
 Frame = +2

Query: 170 KKSKRIRSAFTTEQINYLENEFKKSHYISAVQRKEIANIVNVPEKVIKIWFQNRRMREKK 349
           ++++R R+AFT EQ+  LEN+FK + Y+S  +R  +A  +++ E  +KIWFQNRR + KK
Sbjct: 6   REARRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 65

Query: 350 E 352
           +
Sbjct: 66  Q 66


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 58.8 bits (136), Expect = 6e-11
 Identities = 29/59 (49%), Positives = 40/59 (67%)
 Frame = +2

Query: 179 KRIRSAFTTEQINYLENEFKKSHYISAVQRKEIANIVNVPEKVIKIWFQNRRMREKKEL 355
           +R R  +T  Q   LE EF  +HY++  +R EIA+ + + E+ IKIWFQNRRM+ KKEL
Sbjct: 9   RRGRQTYTRFQTLELEKEFHYNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 67


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 56.8 bits (131), Expect = 3e-10
 Identities = 30/66 (45%), Positives = 41/66 (62%)
 Frame = +2

Query: 155 LSFPAKKSKRIRSAFTTEQINYLENEFKKSHYISAVQRKEIANIVNVPEKVIKIWFQNRR 334
           LS    + KR R  +T  Q   LE EF  + Y++  +R EIA+ + + E+ IKIWFQNRR
Sbjct: 1   LSHCVPERKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 60

Query: 335 MREKKE 352
           M+ KKE
Sbjct: 61  MKWKKE 66


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 56.8 bits (131), Expect = 3e-10
 Identities = 22/60 (36%), Positives = 42/60 (70%)
 Frame = +2

Query: 170 KKSKRIRSAFTTEQINYLENEFKKSHYISAVQRKEIANIVNVPEKVIKIWFQNRRMREKK 349
           K +++ R+ FTT+Q+  LE +F++  Y++  +R E ++ +++ E  +KIWFQNRR + K+
Sbjct: 7   KPNRKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 66


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 56.4 bits (130), Expect = 3e-10
 Identities = 28/58 (48%), Positives = 40/58 (68%)
 Frame = +2

Query: 179 KRIRSAFTTEQINYLENEFKKSHYISAVQRKEIANIVNVPEKVIKIWFQNRRMREKKE 352
           KR R+++T  Q   LE EF  + Y++  +R EIA+ + + E+ IKIWFQNRRM+ KKE
Sbjct: 9   KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 66


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 55.6 bits (128), Expect = 6e-10
 Identities = 28/58 (48%), Positives = 38/58 (65%)
 Frame = +2

Query: 179 KRIRSAFTTEQINYLENEFKKSHYISAVQRKEIANIVNVPEKVIKIWFQNRRMREKKE 352
           KR R  +T  Q   LE EF  + Y++  +R EIA+ + + E+ IKIWFQNRRM+ KKE
Sbjct: 271 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 328


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 54.0 bits (124), Expect = 2e-09
 Identities = 23/59 (38%), Positives = 41/59 (69%)
 Frame = +2

Query: 173 KSKRIRSAFTTEQINYLENEFKKSHYISAVQRKEIANIVNVPEKVIKIWFQNRRMREKK 349
           + KR R+AF+ EQ+  L+ EF ++ Y++  +R++++  + + E  IKIWFQN+R + KK
Sbjct: 19  EEKRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIKIWFQNKRAKIKK 77


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 52.8 bits (121), Expect = 4e-09
 Identities = 23/59 (38%), Positives = 41/59 (69%)
 Frame = +2

Query: 173 KSKRIRSAFTTEQINYLENEFKKSHYISAVQRKEIANIVNVPEKVIKIWFQNRRMREKK 349
           + KR R+AF+ EQ+  L+ EF ++ Y++  +R++++  + + E  IKIWFQN+R + KK
Sbjct: 19  EEKRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQIKIWFQNKRAKIKK 77


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 37.5 bits (83), Expect = 2e-04
 Identities = 14/38 (36%), Positives = 26/38 (68%)
 Frame = +2

Query: 236 KKSHYISAVQRKEIANIVNVPEKVIKIWFQNRRMREKK 349
           +++ Y++  +R E+A  + + +  +KIWFQNRR + KK
Sbjct: 1   QRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKK 38


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 387 VHR*YHLFKIHRATPVHQHRTRPFH 461
           +H   H    H ATP HQH T   H
Sbjct: 426 IHATPHHHHSHAATPHHQHSTPLAH 450


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,656
Number of Sequences: 438
Number of extensions: 4787
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)