Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_G13
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.40 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.40 
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    27   2.8  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 21/62 (33%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
 Frame = +2

Query: 389 GGGXGVFXGXXXPPPPXGXGXXXXGPXXVXPPQNPRXPXFGGG-GXXXPPPGGGXXFPPX 565
           GGG G F G    PPP   G    G        +     FGGG G     PGG    P  
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 566 LG 571
            G
Sbjct: 247 FG 248



 Score = 29.9 bits (64), Expect = 0.53
 Identities = 25/78 (32%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
 Frame = -1

Query: 537 GGGXXXPPPPKXGXRGFWG-GXTXXGPKXKXPFPXGGGG-XXXPXKTPXPPPXXGKKKXX 364
           GGG   PPP   G  GF G G           F  G GG    P      P   G     
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253

Query: 363 XGGGXXXFSPXKGGPKXP 310
            GGG   F    GG   P
Sbjct: 254 FGGGPGGFGGGPGGHGGP 271



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +1

Query: 502 GFWGGGXXXPPPXGGFXXSPXXGGSPXKXXFPQGXXXGP 618
           GF GG    PP  GGF      GG         G   GP
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP 230


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = +2

Query: 425 PPPPXGXGXXXXGPXXVXPPQNPRXPXFGGGGXXXPPPGGGXXFPP 562
           PPPP         P  +  P  P  P  GG     PPPG     PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVP--PPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +2

Query: 428 PPPXGXGXXXXGPXXVXPPQNPRXPXFGGGGXXXPPP 538
           P P         P    PP  P  P   G G   PPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 425 PPPPXGXGXXXXGPXXVXPPQNPRXPXFGGGG 520
           PPPP   G    GP    PP  P  P    GG
Sbjct: 762 PPPPPPPGVAGAGP----PPPPPPPPAVSAGG 789


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +3

Query: 630 GPVXGVFPXXPPPXXGLXKIXPXVXGGAPPPG 725
           GPV GV    PPP  G  +       GAPPPG
Sbjct: 119 GPVRGVGYTAPPPPAGFGR-------GAPPPG 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,305
Number of Sequences: 5004
Number of extensions: 28012
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)