Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_G12
         (1079 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    32   0.62 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    32   0.62 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    32   0.62 
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    30   2.5  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like ...    29   4.3  
AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like ...    29   4.3  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 32.3 bits (70), Expect = 0.62
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +2

Query: 737 PPPXXXXXGGGAPXXXXXXXXXXPPPXKKXGGGGXGGPXPP 859
           PP       GG P          PPP     GG  GGP PP
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 32.3 bits (70), Expect = 0.62
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +2

Query: 737 PPPXXXXXGGGAPXXXXXXXXXXPPPXKKXGGGGXGGPXPP 859
           PP       GG P          PPP     GG  GGP PP
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 32.3 bits (70), Expect = 0.62
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +2

Query: 737 PPPXXXXXGGGAPXXXXXXXXXXPPPXKKXGGGGXGGPXPP 859
           PP       GG P          PPP     GG  GGP PP
Sbjct: 330 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 806 PPPXKKXGGGGXGGPXPP 859
           PPP  + G GG GGP PP
Sbjct: 783 PPPSFRGGRGGHGGPPPP 800



 Score = 29.1 bits (62), Expect = 5.7
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = -1

Query: 854 GGAPXXPPPPXFXXGGGXXFFFFFFXXXPPPPXXXXXGGG 735
           GG    PPPP F  G G           PPPP     GGG
Sbjct: 776 GGMHHMPPPPSFRGGRGG-------HGGPPPPHFDRRGGG 808


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 19/62 (30%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
 Frame = +2

Query: 665 GGGGGXXXXXXXXXXXXXXXXXXXPPPXXXXXG-GGAPXXXXXXXXXXPPPXKKXGGGGX 841
           GGGGG                   PPP     G GG            PPP    GG G 
Sbjct: 26  GGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGG 85

Query: 842 GG 847
           GG
Sbjct: 86  GG 87


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 19/62 (30%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
 Frame = +2

Query: 665 GGGGGXXXXXXXXXXXXXXXXXXXPPPXXXXXG-GGAPXXXXXXXXXXPPPXKKXGGGGX 841
           GGGGG                   PPP     G GG            PPP    GG G 
Sbjct: 26  GGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGG 85

Query: 842 GG 847
           GG
Sbjct: 86  GG 87


>AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform b protein.
          Length = 453

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = -1

Query: 857 GGGAPXXPPPPXFXXGGGXXFFFFFFXXXPPPPXXXXXGGG 735
           GGGAP          GGG  +        PPPP     GGG
Sbjct: 36  GGGAPPCSSSSYATGGGGGSYAAAPALPPPPPPPPAPIGGG 76


>AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform a protein.
          Length = 393

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = -1

Query: 857 GGGAPXXPPPPXFXXGGGXXFFFFFFXXXPPPPXXXXXGGG 735
           GGGAP          GGG  +        PPPP     GGG
Sbjct: 36  GGGAPPCSSSSYATGGGGGSYAAAPALPPPPPPPPAPIGGG 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,331,322
Number of Sequences: 27780
Number of extensions: 215798
Number of successful extensions: 1214
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2898039926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)